Literature DB >> 22023909

Contrasting catalytic and allosteric mechanisms for phosphoglycerate dehydrogenases.

Gregory A Grant1.   

Abstract

D-3-Phosphoglycerate dehydrogenases (PGDH) exist with at least three different structural motifs and the enzymes from different species display distinctly different mechanisms. In many species, particularly bacteria, the catalytic activity is regulated allosterically through binding of l-serine to a distinct structural domain, termed the ACT domain. Some species, such as Mycobacterium tuberculosis, contain an additional domain, called the "allosteric substrate binding" or ASB domain, that functions as a co-domain in the regulation of catalytic activity. That is, both substrate and effector function synergistically in the regulation of activity to give the enzyme some interesting properties that may have physiological relevance for the persistent state of tuberculosis. Both enzymes function through a V-type regulatory mechanism and, in the Escherichia coli enzyme, it has been demonstrated that this results from a dead-end complex that decreases the concentration of active species rather than a decrease in the velocity of the active species. This review compares and contrasts what we know about these enzymes and provides additional insight into their mechanism of allosteric regulation. Copyright Â
© 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22023909      PMCID: PMC3294004          DOI: 10.1016/j.abb.2011.10.005

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  45 in total

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Journal:  J Mol Biol       Date:  1973-05-15       Impact factor: 5.469

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Journal:  Biochem J       Date:  1988-11-15       Impact factor: 3.857

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Journal:  Nat Struct Biol       Date:  1995-01

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Authors:  Y Achouri; M H Rider; E V Schaftingen; M Robbi
Journal:  Biochem J       Date:  1997-04-15       Impact factor: 3.857

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Authors:  K Snell
Journal:  Adv Enzyme Regul       Date:  1984

9.  The presence of a histidine-aspartic acid pair in the active site of 2-hydroxyacid dehydrogenases. X-ray refinement of cytoplasmic malate dehydrogenase.

Authors:  J J Birktoft; L J Banaszak
Journal:  J Biol Chem       Date:  1983-01-10       Impact factor: 5.157

10.  A novel alpha-ketoglutarate reductase activity of the serA-encoded 3-phosphoglycerate dehydrogenase of Escherichia coli K-12 and its possible implications for human 2-hydroxyglutaric aciduria.

Authors:  G Zhao; M E Winkler
Journal:  J Bacteriol       Date:  1996-01       Impact factor: 3.490

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  18 in total

Review 1.  What Mutagenesis Can and Cannot Reveal About Allostery.

Authors:  Gerald M Carlson; Aron W Fenton
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

Review 2.  Allostery and compartmentalization: old but not forgotten.

Authors:  Hyungjin Eoh; Kyu Y Rhee
Journal:  Curr Opin Microbiol       Date:  2014-03-05       Impact factor: 7.934

3.  Coupling between d-3-phosphoglycerate dehydrogenase and d-2-hydroxyglutarate dehydrogenase drives bacterial l-serine synthesis.

Authors:  Wen Zhang; Manman Zhang; Chao Gao; Yipeng Zhang; Yongsheng Ge; Shiting Guo; Xiaoting Guo; Zikang Zhou; Qiuyuan Liu; Yingxin Zhang; Cuiqing Ma; Fei Tao; Ping Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-21       Impact factor: 11.205

4.  The PHGDH enigma: Do cancer cells only need serine or also a redox modulator?

Authors:  Albert M Li; Jiangbin Ye
Journal:  Cancer Lett       Date:  2020-02-04       Impact factor: 8.679

5.  Inhibition of 3-phosphoglycerate dehydrogenase (PHGDH) by indole amides abrogates de novo serine synthesis in cancer cells.

Authors:  Edouard Mullarky; Jiayi Xu; Anita D Robin; David J Huggins; Andy Jennings; Naoyoshi Noguchi; Andrea Olland; Damodharan Lakshminarasimhan; Michael Miller; Daisuke Tomita; Mayako Michino; Taojunfeng Su; Guoan Zhang; Andrew W Stamford; Peter T Meinke; Stacia Kargman; Lewis C Cantley
Journal:  Bioorg Med Chem Lett       Date:  2019-07-06       Impact factor: 2.823

6.  An epitope tag alters phosphoglycerate dehydrogenase structure and impairs ability to support cell proliferation.

Authors:  Katherine R Mattaini; Edward J Brignole; Mitali Kini; Shawn M Davidson; Brian P Fiske; Catherine L Drennan; Matthew G Vander Heiden
Journal:  Cancer Metab       Date:  2015-04-29

7.  Diverse allosteric and catalytic functions of tetrameric d-lactate dehydrogenases from three Gram-negative bacteria.

Authors:  Nayuta Furukawa; Akimasa Miyanaga; Misato Togawa; Masahiro Nakajima; Hayao Taguchi
Journal:  AMB Express       Date:  2014-10-28       Impact factor: 3.298

8.  Succinate Overproduction: A Case Study of Computational Strain Design Using a Comprehensive Escherichia coli Kinetic Model.

Authors:  Ali Khodayari; Anupam Chowdhury; Costas D Maranas
Journal:  Front Bioeng Biotechnol       Date:  2015-01-05

9.  Structural insights into the enzymatic activity and potential substrate promiscuity of human 3-phosphoglycerate dehydrogenase (PHGDH).

Authors:  Judith E Unterlass; Robert J Wood; Arnaud Baslé; Julie Tucker; Céline Cano; Martin M E Noble; Nicola J Curtin
Journal:  Oncotarget       Date:  2017-11-06

10.  Integration of flux measurements to resolve changes in anabolic and catabolic metabolism in cardiac myocytes.

Authors:  Andrew A Gibb; Pawel K Lorkiewicz; Yu-Ting Zheng; Xiang Zhang; Aruni Bhatnagar; Steven P Jones; Bradford G Hill
Journal:  Biochem J       Date:  2017-08-07       Impact factor: 3.857

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