Literature DB >> 22022634

Accurate and flexible power calculations on the spot: Applications to genomic research.

Hemant K Tiwari1, Thomas Birkner, Ankur Moondan, Shiju Zhang, Grier P Page, Amit Patki, David B Allison.   

Abstract

Often investigators need to calculate power to demonstrate feasibility of proposed genetic studies for grant proposals or simply to aid in their own study planning. Frequently, power can be easily calculated using a closed form formula. However, in some situations such formulae for calculating power have not been derived and derivation on demand may be difficult if not impossible. In these situations investigators typically perform simulations specific to the study. Yet such simulations can be computationally extensive and take weeks to months depending on the circumstances. Here, we provide a simple method to rapidly estimate power when one has power estimates available for corresponding situations that differ from the situation of interest only in sample size and/or alpha (type I error) level desired. We show by application to multiple published results from the genomics field that these methods are generally very accurate and applicable to a broad range of genomic studies.

Entities:  

Year:  2011        PMID: 22022634      PMCID: PMC3196559          DOI: 10.4310/sii.2011.v4.n3.a9

Source DB:  PubMed          Journal:  Stat Interface        ISSN: 1938-7989            Impact factor:   0.582


  17 in total

1.  Assessment and management of single nucleotide polymorphism genotype errors in genetic association analysis.

Authors:  D Gordon; J Ott
Journal:  Pac Symp Biocomput       Date:  2001

2.  A general test of association for quantitative traits in nuclear families.

Authors:  G R Abecasis; L R Cardon; W O Cookson
Journal:  Am J Hum Genet       Date:  2000-01       Impact factor: 11.025

3.  Power calculations for familial aggregation studies.

Authors:  Nusrat Rabbee; Rebecca A Betensky
Journal:  Genet Epidemiol       Date:  2004-05       Impact factor: 2.135

4.  Incorporating genotyping uncertainty in haplotype inference for single-nucleotide polymorphisms.

Authors:  Hosung Kang; Zhaohui S Qin; Tianhua Niu; Jun S Liu
Journal:  Am J Hum Genet       Date:  2004-02-13       Impact factor: 11.025

5.  Exact family-based association tests for biallelic data.

Authors:  Kady Schneiter; Nan Laird; Chris Corcoran
Journal:  Genet Epidemiol       Date:  2005-11       Impact factor: 2.135

6.  Upward bias in odds ratio estimates from genome-wide association studies.

Authors:  Chad Garner
Journal:  Genet Epidemiol       Date:  2007-05       Impact factor: 2.135

7.  Imprinting detection by extending a regression-based QTL analysis method.

Authors:  Olga Y Gorlova; Lei Lei; Dakai Zhu; Shih-Feng Weng; Sanjay Shete; Yiqun Zhang; Wei-Dong Li; R Arlen Price; Christopher I Amos
Journal:  Hum Genet       Date:  2007-06-12       Impact factor: 4.132

8.  Trade-off between false positives and false negatives in the linkage analysis of complex traits.

Authors:  A A Todorov; D C Rao
Journal:  Genet Epidemiol       Date:  1997       Impact factor: 2.135

9.  A concordance correlation coefficient to evaluate reproducibility.

Authors:  L I Lin
Journal:  Biometrics       Date:  1989-03       Impact factor: 2.571

10.  Pedigree tests of transmission disequilibrium.

Authors:  G R Abecasis; W O Cookson; L R Cardon
Journal:  Eur J Hum Genet       Date:  2000-07       Impact factor: 4.246

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  2 in total

1.  Imputation across genotyping arrays for genome-wide association studies: assessment of bias and a correction strategy.

Authors:  Eric O Johnson; Dana B Hancock; Joshua L Levy; Nathan C Gaddis; Nancy L Saccone; Laura J Bierut; Grier P Page
Journal:  Hum Genet       Date:  2013-01-22       Impact factor: 4.132

2.  The effectiveness of breakfast recommendations on weight loss: a randomized controlled trial.

Authors:  Emily J Dhurandhar; John Dawson; Amy Alcorn; Lesli H Larsen; Elizabeth A Thomas; Michelle Cardel; Ashley C Bourland; Arne Astrup; Marie-Pierre St-Onge; James O Hill; Caroline M Apovian; James M Shikany; David B Allison
Journal:  Am J Clin Nutr       Date:  2014-06-04       Impact factor: 7.045

  2 in total

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