Literature DB >> 22009731

WheatGenome.info: an integrated database and portal for wheat genome information.

Kaitao Lai1, Paul J Berkman, Michal Tadeusz Lorenc, Chris Duran, Lars Smits, Sahana Manoli, Jiri Stiller, David Edwards.   

Abstract

Bread wheat (Triticum aestivum) is one of the most important crop plants, globally providing staple food for a large proportion of the human population. However, improvement of this crop has been limited due to its large and complex genome. Advances in genomics are supporting wheat crop improvement. We provide a variety of web-based systems hosting wheat genome and genomic data to support wheat research and crop improvement. WheatGenome.info is an integrated database resource which includes multiple web-based applications. These include a GBrowse2-based wheat genome viewer with BLAST search portal, TAGdb for searching wheat second-generation genome sequence data, wheat autoSNPdb, links to wheat genetic maps using CMap and CMap3D, and a wheat genome Wiki to allow interaction between diverse wheat genome sequencing activities. This system includes links to a variety of wheat genome resources hosted at other research organizations. This integrated database aims to accelerate wheat genome research and is freely accessible via the web interface at http://www.wheatgenome.info/.

Entities:  

Mesh:

Year:  2011        PMID: 22009731     DOI: 10.1093/pcp/pcr141

Source DB:  PubMed          Journal:  Plant Cell Physiol        ISSN: 0032-0781            Impact factor:   4.927


  13 in total

Review 1.  Accessing complex crop genomes with next-generation sequencing.

Authors:  David Edwards; Jacqueline Batley; Rod J Snowdon
Journal:  Theor Appl Genet       Date:  2012-09-05       Impact factor: 5.699

2.  Molecular basis of adaptation to high soil boron in wheat landraces and elite cultivars.

Authors:  Margaret Pallotta; Thorsten Schnurbusch; Julie Hayes; Alison Hay; Ute Baumann; Jeff Paull; Peter Langridge; Tim Sutton
Journal:  Nature       Date:  2014-07-02       Impact factor: 49.962

Review 3.  Comparative genetic, biochemical and physiological analysis of sodium and chlorine in wheat.

Authors:  Muhammad Naeem; Arshad Abbas; Sami Ul-Allah; Waqas Malik; Faheem Shehzad Baloch
Journal:  Mol Biol Rep       Date:  2022-05-05       Impact factor: 2.742

4.  Triticeae resources in Ensembl Plants.

Authors:  Dan M Bolser; Arnaud Kerhornou; Brandon Walts; Paul Kersey
Journal:  Plant Cell Physiol       Date:  2014-11-27       Impact factor: 4.927

Review 5.  Unlocking Triticeae genomics to sustainably feed the future.

Authors:  Keiichi Mochida; Kazuo Shinozaki
Journal:  Plant Cell Physiol       Date:  2013-11-06       Impact factor: 4.927

6.  Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat (Triticum aestivum L.).

Authors:  Umar M Quraishi; Caroline Pont; Qurat-Ul Ain; Raphael Flores; Laura Burlot; Michael Alaux; Hadi Quesneville; Jerome Salse
Journal:  Front Plant Sci       Date:  2017-11-14       Impact factor: 5.753

7.  dbWFA: a web-based database for functional annotation of Triticum aestivum transcripts.

Authors:  Jonathan Vincent; Zhanwu Dai; Catherine Ravel; Frédéric Choulet; Said Mouzeyar; M Fouad Bouzidi; Marie Agier; Pierre Martre
Journal:  Database (Oxford)       Date:  2013-05-09       Impact factor: 3.451

8.  Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing.

Authors:  Stéphane Delmas; Steven T Pullan; Sanyasi Gaddipati; Matthew Kokolski; Sunir Malla; Martin J Blythe; Roger Ibbett; Maria Campbell; Susan Liddell; Aziz Aboobaker; Gregory A Tucker; David B Archer
Journal:  PLoS Genet       Date:  2012-08-09       Impact factor: 5.917

9.  Next generation characterisation of cereal genomes for marker discovery.

Authors:  Paul Visendi; Jacqueline Batley; David Edwards
Journal:  Biology (Basel)       Date:  2013-11-25

10.  Discovery of Single Nucleotide Polymorphisms in Complex Genomes Using SGSautoSNP.

Authors:  Michał T Lorenc; Satomi Hayashi; Jiri Stiller; Hong Lee; Sahana Manoli; Pradeep Ruperao; Paul Visendi; Paul J Berkman; Kaitao Lai; Jacqueline Batley; David Edwards
Journal:  Biology (Basel)       Date:  2012-08-27
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.