Literature DB >> 22006638

Kendrick-analogous network visualisation of ion cyclotron resonance Fourier transform mass spectra: improved options for the assignment of elemental compositions and the classification of organic molecular complexity.

D Tziotis, N Hertkorn, Ph Schmitt-Kopplin.   

Abstract

Here, we propose a novel computational and visual approach for the analysis of high field Fourier transform ion cyclotron resonance mass spectra (FTICR/MS) based on successive and multiple atomic and Kendrick analogous mass difference analyses. Compositional networks based on elemental compositions and functional networks based on selected functional groups equivalents enable improved assignment options of elemental composition and classification of organic complexity with tunable validation windows. The approach is demonstrated through the analysis of a 12T FTICR mass spectrum of an intricate water soluble extract of a secondary organic aerosol with a previously established abundance in CHNOS molecules.

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Year:  2011        PMID: 22006638     DOI: 10.1255/ejms.1135

Source DB:  PubMed          Journal:  Eur J Mass Spectrom (Chichester)        ISSN: 1469-0667            Impact factor:   1.067


  36 in total

1.  A Novel and Intuitive Method of Displaying and Interacting with Mass Difference Information: Application to Oligonucleotide Drug Impurities.

Authors:  Stilianos G Roussis
Journal:  J Am Soc Mass Spectrom       Date:  2015-04-03       Impact factor: 3.109

2.  Mycorrhiza-Triggered Transcriptomic and Metabolomic Networks Impinge on Herbivore Fitness.

Authors:  Moritz Kaling; Anna Schmidt; Franco Moritz; Maaria Rosenkranz; Michael Witting; Karl Kasper; Dennis Janz; Philippe Schmitt-Kopplin; Jörg-Peter Schnitzler; Andrea Polle
Journal:  Plant Physiol       Date:  2018-02-08       Impact factor: 8.340

3.  Distinct signatures of host-microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet.

Authors:  Alesia Walker; Barbara Pfitzner; Susanne Neschen; Melanie Kahle; Mourad Harir; Marianna Lucio; Franco Moritz; Dimitrios Tziotis; Michael Witting; Michael Rothballer; Marion Engel; Michael Schmid; David Endesfelder; Martin Klingenspor; Thomas Rattei; Wolfgang Zu Castell; Martin Hrabé de Angelis; Anton Hartmann; Philippe Schmitt-Kopplin
Journal:  ISME J       Date:  2014-06-06       Impact factor: 10.302

4.  Network Analysis Reveals Spatial Clustering and Annotation of Complex Chemical Spaces: Application to Astrochemistry.

Authors:  Alexander Ruf; Grégoire Danger
Journal:  Anal Chem       Date:  2022-10-09       Impact factor: 8.008

5.  High metabolomic microdiversity within co-occurring isolates of the extremely halophilic bacterium Salinibacter ruber.

Authors:  Josefa Antón; Marianna Lucio; Arantxa Peña; Ana Cifuentes; Jocelyn Brito-Echeverría; Franco Moritz; Dimitrios Tziotis; Cristina López; Mercedes Urdiain; Philippe Schmitt-Kopplin; Ramon Rosselló-Móra
Journal:  PLoS One       Date:  2013-05-31       Impact factor: 3.240

6.  Metabolic features of Protochlamydia amoebophila elementary bodies--a link between activity and infectivity in Chlamydiae.

Authors:  Barbara S Sixt; Alexander Siegl; Constanze Müller; Margarete Watzka; Anna Wultsch; Dimitrios Tziotis; Jacqueline Montanaro; Andreas Richter; Philippe Schmitt-Kopplin; Matthias Horn
Journal:  PLoS Pathog       Date:  2013-08-08       Impact factor: 6.823

7.  How subtle is the "terroir" effect? Chemistry-related signatures of two "climats de Bourgogne".

Authors:  Chloé Roullier-Gall; Marianna Lucio; Laurence Noret; Philippe Schmitt-Kopplin; Régis D Gougeon
Journal:  PLoS One       Date:  2014-05-23       Impact factor: 3.240

Review 8.  Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics.

Authors:  Manoj Ghaste; Robert Mistrik; Vladimir Shulaev
Journal:  Int J Mol Sci       Date:  2016-05-25       Impact factor: 5.923

9.  Microbial Hotspots in Lithic Microhabitats Inferred from DNA Fractionation and Metagenomics in the Atacama Desert.

Authors:  Dirk Schulze-Makuch; Daniel Lipus; Felix L Arens; Mickael Baqué; Till L V Bornemann; Jean-Pierre de Vera; Markus Flury; Jan Frösler; Jacob Heinz; Yunha Hwang; Samuel P Kounaves; Kai Mangelsdorf; Rainer U Meckenstock; Mark Pannekens; Alexander J Probst; Johan S Sáenz; Janosch Schirmack; Michael Schloter; Philippe Schmitt-Kopplin; Beate Schneider; Jenny Uhl; Gisle Vestergaard; Bernardita Valenzuela; Pedro Zamorano; Dirk Wagner
Journal:  Microorganisms       Date:  2021-05-12

10.  MetICA: independent component analysis for high-resolution mass-spectrometry based non-targeted metabolomics.

Authors:  Youzhong Liu; Kirill Smirnov; Marianna Lucio; Régis D Gougeon; Hervé Alexandre; Philippe Schmitt-Kopplin
Journal:  BMC Bioinformatics       Date:  2016-03-02       Impact factor: 3.169

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