Literature DB >> 22003999

Revival of Seeliger's historical 'Special Listeria Culture Collection'.

Jana K Haase1, Ronan A Murphy, Kingshuk Roy Choudhury, Mark Achtman.   

Abstract

The recent evolution of bacterial species can be elucidated with the aid of large historical strain collections. Unfortunately, information for some of these strain collections is not publicly available, or only in a format which is not readily digitized. The form of storage of traditional collection often requires considerable space and microbiological access to the individual strains can be time consuming. One such historical strain collection was assembled by Professor H.P. Seeliger, the so-called 'Special Listeria Culture Collection' (SLCC). The SLCC contains over 6000 Listeria strains which had been isolated between 1921 and 1987. The information on the properties of the strains was hand written or typed, primarily in German, and the stabs and lyophils used for storage were not ordered. Here we present a description of this strain collection after resuscitation and digitalization. Data were transcribed into a relational database and the revived bacterial strains were stored in a robotically friendly format, where the location of each tube is stored in a database. We resuscitated 4404 Listeria strains from the SLCC, and summarize their properties as well as making the detailed strain information publicly available. This digital information and the revival of the SLCC will facilitate historical analyses of the phylogeography of Listeria.
© 2011 Society for Applied Microbiology and Blackwell Publishing Ltd.

Mesh:

Year:  2011        PMID: 22003999     DOI: 10.1111/j.1462-2920.2011.02610.x

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  8 in total

Review 1.  Looking Backward To Move Forward: the Utility of Sequencing Historical Bacterial Genomes.

Authors:  Rebecca J Bennett; Kate S Baker
Journal:  J Clin Microbiol       Date:  2019-07-26       Impact factor: 5.948

2.  Determination of Evolutionary Relationships of Outbreak-Associated Listeria monocytogenes Strains of Serotypes 1/2a and 1/2b by Whole-Genome Sequencing.

Authors:  Teresa M Bergholz; Henk C den Bakker; Lee S Katz; Benjamin J Silk; Kelly A Jackson; Zuzana Kucerova; Lavin A Joseph; Maryann Turnsek; Lori M Gladney; Jessica L Halpin; Karen Xavier; Joseph Gossack; Todd J Ward; Michael Frace; Cheryl L Tarr
Journal:  Appl Environ Microbiol       Date:  2015-11-20       Impact factor: 4.792

3.  Transforming microbial genotyping: a robotic pipeline for genotyping bacterial strains.

Authors:  Brian O'Farrell; Jana K Haase; Vimalkumar Velayudhan; Ronan A Murphy; Mark Achtman
Journal:  PLoS One       Date:  2012-10-29       Impact factor: 3.240

4.  Atypical Listeria innocua strains possess an intact LIPI-3.

Authors:  Evelyn M Clayton; Karen M Daly; Caitriona M Guinane; Colin Hill; Paul D Cotter; Paul R Ross
Journal:  BMC Microbiol       Date:  2014-03-08       Impact factor: 3.605

5.  An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes.

Authors:  Clémentine Henri; Pimlapas Leekitcharoenphon; Heather A Carleton; Nicolas Radomski; Rolf S Kaas; Jean-François Mariet; Arnaud Felten; Frank M Aarestrup; Peter Gerner Smidt; Sophie Roussel; Laurent Guillier; Michel-Yves Mistou; René S Hendriksen
Journal:  Front Microbiol       Date:  2017-11-29       Impact factor: 5.640

6.  Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome.

Authors:  Carsten Kuenne; André Billion; Mobarak Abu Mraheil; Axel Strittmatter; Rolf Daniel; Alexander Goesmann; Sukhadeo Barbuddhe; Torsten Hain; Trinad Chakraborty
Journal:  BMC Genomics       Date:  2013-01-22       Impact factor: 3.969

7.  Genome sequencing of Listeria monocytogenes "Quargel" listeriosis outbreak strains reveals two different strains with distinct in vitro virulence potential.

Authors:  Kathrin Rychli; Anneliese Müller; Andreas Zaiser; Dagmar Schoder; Franz Allerberger; Martin Wagner; Stephan Schmitz-Esser
Journal:  PLoS One       Date:  2014-02-26       Impact factor: 3.240

8.  Comparison of widely used Listeria monocytogenes strains EGD, 10403S, and EGD-e highlights genomic variations underlying differences in pathogenicity.

Authors:  Christophe Bécavin; Christiane Bouchier; Pierre Lechat; Cristel Archambaud; Sophie Creno; Edith Gouin; Zongfu Wu; Andreas Kühbacher; Sylvain Brisse; M Graciela Pucciarelli; Francisco García-del Portillo; Torsten Hain; Daniel A Portnoy; Trinad Chakraborty; Marc Lecuit; Javier Pizarro-Cerdá; Ivan Moszer; Hélène Bierne; Pascale Cossart
Journal:  mBio       Date:  2014-03-25       Impact factor: 7.867

  8 in total

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