Literature DB >> 22002222

Biogenesis of 2-agmatinylcytidine catalyzed by the dual protein and RNA kinase TiaS.

Naohiro Terasaka1, Satoshi Kimura, Takuo Osawa, Tomoyuki Numata, Tsutomu Suzuki.   

Abstract

The archaeal AUA-codon specific tRNA(Ile) contains 2-agmatinylcytidine (agm(2)C or agmatidine) at the anticodon wobble position (position 34). The formation of this essential modification is catalyzed by tRNA(Ile)-agm(2)C synthetase (TiaS) using agmatine and ATP as substrates. TiaS has a previously unknown catalytic domain, which we have named the Thr18-Cyt34 kinase domain (TCKD). Biochemical analyses of Archaeoglobus fulgidus TiaS and its mutants revealed that the TCKD first hydrolyzes ATP into AMP and pyrophosphate, then phosphorylates the C2 position of C34 with the γ-phosphate. Next, the amino group of agmatine attacks this position to release the phosphate and form agm(2)C. Notably, the TCKD also autophosphorylates the Thr18 of TiaS, which may be involved in agm(2)C formation. Thus, the unique kinase domain of TiaS catalyzes dual phosphorylation of protein and RNA substrates.

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Year:  2011        PMID: 22002222     DOI: 10.1038/nsmb.2121

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  18 in total

1.  Hsc70/Hsp90 chaperone machinery mediates ATP-dependent RISC loading of small RNA duplexes.

Authors:  Shintaro Iwasaki; Maki Kobayashi; Mayuko Yoda; Yuriko Sakaguchi; Susumu Katsuma; Tsutomu Suzuki; Yukihide Tomari
Journal:  Mol Cell       Date:  2010-06-03       Impact factor: 17.970

2.  Direct evidence that ThiI is an ATP pyrophosphatase for the adenylation of uridine in 4-thiouridine biosynthesis.

Authors:  Delin You; Tiegang Xu; Fen Yao; Xiufen Zhou; Zixin Deng
Journal:  Chembiochem       Date:  2008-08-11       Impact factor: 3.164

3.  Pyrophosphate:D-fructose 6-phosphate 1-phosphotransferase. A new enzyme with the glycolytic function of 6-phosphofructokinase.

Authors:  R E Reeves; D J South; H J Blytt; L G Warren
Journal:  J Biol Chem       Date:  1974-12-25       Impact factor: 5.157

4.  Novel deoxynucleoside-phosphorylating enzymes in mycoplasmas: evidence for efficient utilization of deoxynucleosides.

Authors:  L Wang; J Westberg; G Bölske; S Eriksson
Journal:  Mol Microbiol       Date:  2001-11       Impact factor: 3.501

5.  Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions.

Authors:  Yoshiho Ikeuchi; Naoki Shigi; Jun-Ichi Kato; Akiko Nishimura; Tsutomu Suzuki
Journal:  Mol Cell       Date:  2006-01-06       Impact factor: 17.970

6.  molecular mechanism of lysidine synthesis that determines tRNA identity and codon recognition.

Authors:  Yoshiho Ikeuchi; Akiko Soma; Tomotake Ote; Jun-ichi Kato; Yasuhiko Sekine; Tsutomu Suzuki
Journal:  Mol Cell       Date:  2005-07-22       Impact factor: 17.970

7.  Identification and characterization of a tRNA decoding the rare AUA codon in Haloarcula marismortui.

Authors:  Caroline Köhrer; Gayathri Srinivasan; Debabrata Mandal; Bibekanand Mallick; Zhumur Ghosh; Jayprokas Chakrabarti; Uttam L Rajbhandary
Journal:  RNA       Date:  2007-11-12       Impact factor: 4.942

8.  Agmatine is essential for the cell growth of Thermococcus kodakaraensis.

Authors:  Wakao Fukuda; Nanako Morimoto; Tadayuki Imanaka; Shinsuke Fujiwara
Journal:  FEMS Microbiol Lett       Date:  2008-08-13       Impact factor: 2.742

9.  An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA.

Authors:  Akiko Soma; Yoshiho Ikeuchi; Satoru Kanemasa; Kazuo Kobayashi; Naotake Ogasawara; Tomotake Ote; Jun-ichi Kato; Kimitsuna Watanabe; Yasuhiko Sekine; Tsutomu Suzuki
Journal:  Mol Cell       Date:  2003-09       Impact factor: 17.970

10.  Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions.

Authors:  Akiko Noma; Yuriko Sakaguchi; Tsutomu Suzuki
Journal:  Nucleic Acids Res       Date:  2009-01-16       Impact factor: 16.971

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  7 in total

1.  Structural basis of tRNA agmatinylation essential for AUA codon decoding.

Authors:  Takuo Osawa; Satoshi Kimura; Naohiro Terasaka; Hideko Inanaga; Tsutomu Suzuki; Tomoyuki Numata
Journal:  Nat Struct Mol Biol       Date:  2011-10-16       Impact factor: 15.369

2.  Identification of UAP1L1 as a critical factor for protein O-GlcNAcylation and cell proliferation in human hepatoma cells.

Authors:  Ching-Yu Lai; Hsuan Liu; Kai Xuan Tin; Yi Huang; Kun-Hai Yeh; Hubert W Peng; Huan-Da Chen; Jun-Yu He; Yun-Jung Chiang; Chun-Shan Liu; Shih-Yen Weng; Mi-Hua Tao; Jeffrey Jong-Young Yen; Hsin-Fang Yang-Yen
Journal:  Oncogene       Date:  2018-08-10       Impact factor: 9.867

Review 3.  Convergent evolution of AUA decoding in bacteria and archaea.

Authors:  Tsutomu Suzuki; Tomoyuki Numata
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

Review 4.  Bacterial wobble modifications of NNA-decoding tRNAs.

Authors:  Emil M Nilsson; Rebecca W Alexander
Journal:  IUBMB Life       Date:  2019-07-08       Impact factor: 3.885

5.  Decoding system for the AUA codon by tRNAIle with the UAU anticodon in Mycoplasma mobile.

Authors:  Takaaki Taniguchi; Kenjyo Miyauchi; Daisuke Nakane; Makoto Miyata; Akira Muto; Susumu Nishimura; Tsutomu Suzuki
Journal:  Nucleic Acids Res       Date:  2013-01-07       Impact factor: 16.971

Review 6.  Structural basis for regulation of RNA-binding proteins by phosphorylation.

Authors:  Roopa Thapar
Journal:  ACS Chem Biol       Date:  2015-01-14       Impact factor: 5.100

Review 7.  Transfer RNA Modification Enzymes from Thermophiles and Their Modified Nucleosides in tRNA.

Authors:  Hiroyuki Hori; Takuya Kawamura; Takako Awai; Anna Ochi; Ryota Yamagami; Chie Tomikawa; Akira Hirata
Journal:  Microorganisms       Date:  2018-10-20
  7 in total

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