Literature DB >> 22001849

A quantitative comparison of Calvin-Benson cycle models.

Anne Arnold1, Zoran Nikoloski.   

Abstract

The Calvin-Benson cycle (CBC) provides the precursors for biomass synthesis necessary for plant growth. The dynamic behavior and yield of the CBC depend on the environmental conditions and regulation of the cellular state. Accurate quantitative models hold the promise of identifying the key determinants of the tightly regulated CBC function and their effects on the responses in future climates. We provide an integrative analysis of the largest compendium of existing models for photosynthetic processes. Based on the proposed ranking, our framework facilitates the discovery of best-performing models with regard to metabolomics data and of candidates for metabolic engineering.
Copyright © 2011 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2011        PMID: 22001849     DOI: 10.1016/j.tplants.2011.09.004

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  15 in total

Review 1.  Plant metabolic modeling: achieving new insight into metabolism and metabolic engineering.

Authors:  Kambiz Baghalian; Mohammad-Reza Hajirezaei; Falk Schreiber
Journal:  Plant Cell       Date:  2014-10-24       Impact factor: 11.277

Review 2.  Optimization of photosynthesis by multiple metabolic pathways involving interorganelle interactions: resource sharing and ROS maintenance as the bases.

Authors:  Bobba Sunil; Sai K Talla; Vetcha Aswani; Agepati S Raghavendra
Journal:  Photosynth Res       Date:  2013-07-25       Impact factor: 3.573

3.  Temperature-dependent regulation of electron transport and ATP synthesis in chloroplasts in vitro and in silico.

Authors:  Alexander N Tikhonov; Alexey V Vershubskii
Journal:  Photosynth Res       Date:  2020-08-11       Impact factor: 3.573

4.  Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations.

Authors:  Sabrina Kleessen; Zoran Nikoloski
Journal:  BMC Syst Biol       Date:  2012-03-12

5.  Systematic analysis of stability patterns in plant primary metabolism.

Authors:  Dorothee Girbig; Sergio Grimbs; Joachim Selbig
Journal:  PLoS One       Date:  2012-04-13       Impact factor: 3.240

6.  The systems biology simulation core algorithm.

Authors:  Roland Keller; Alexander Dörr; Akito Tabira; Akira Funahashi; Michael J Ziller; Richard Adams; Nicolas Rodriguez; Nicolas Le Novère; Noriko Hiroi; Hannes Planatscher; Andreas Zell; Andreas Dräger
Journal:  BMC Syst Biol       Date:  2013-07-05

7.  Metabolic model of central carbon and energy metabolisms of growing Arabidopsis thaliana in relation to sucrose translocation.

Authors:  Maksim Zakhartsev; Irina Medvedeva; Yury Orlov; Ilya Akberdin; Olga Krebs; Waltraud X Schulze
Journal:  BMC Plant Biol       Date:  2016-12-28       Impact factor: 4.215

8.  Stoichiometric Correlation Analysis: Principles of Metabolic Functionality from Metabolomics Data.

Authors:  Kevin Schwahn; Romina Beleggia; Nooshin Omranian; Zoran Nikoloski
Journal:  Front Plant Sci       Date:  2017-12-18       Impact factor: 5.753

9.  Structural control of metabolic flux.

Authors:  Max Sajitz-Hermstein; Zoran Nikoloski
Journal:  PLoS Comput Biol       Date:  2013-12-19       Impact factor: 4.475

10.  SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks.

Authors:  Andreas Dräger; Daniel C Zielinski; Roland Keller; Matthias Rall; Johannes Eichner; Bernhard O Palsson; Andreas Zell
Journal:  BMC Syst Biol       Date:  2015-10-09
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