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Literature DB >> 21996440

Structural insights into regulation and action of SWI2/SNF2 ATPases.

Abstract

This review focuses on recent structural insights into regulation and nucleic acid binding of Superfamily 2 (SF2)-type helicases as they relate to chromatin remodelers. We review structural features of the Chd1 chromatin remodeler regarding regulation of the ATPase motor, and discuss related strategies observed for other SF2 ATPases. Since no SWI2/SNF2 ATPases have yet been captured bound to DNA in a state competent for ATP hydrolysis, we turn to structural examples from the DEAD-box RNA helicase family, and suggest that SWI2/SNF2-specific inserts may be poised to alter canonical duplex DNA structure.

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Year: 2011 PMID： 21996440 PMCID： PMC3232343 DOI： 10.1016/j.sbi.2011.09.003

Source DB: PubMed Journal: Curr Opin Struct Biol ISSN： 0959-440X Impact factor: 6.809

48 in total

Review 1. Rewiring cell signaling: the logic and plasticity of eukaryotic protein circuitry.

Authors: John E Dueber; Brian J Yeh; Roby P Bhattacharyya; Wendell A Lim
Journal: Curr Opin Struct Biol Date: 2004-12 Impact factor: 6.809

2. Structure of the SWI2/SNF2 chromatin-remodeling domain of eukaryotic Rad54.

Authors: Nicolas H Thomä; Bryan K Czyzewski; Andrei A Alexeev; Alexander V Mazin; Stephen C Kowalczykowski; Nikola P Pavletich
Journal: Nat Struct Mol Biol Date: 2005-04-03 Impact factor: 15.369

3. X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA.

Authors: Harald Dürr; Christian Körner; Marisa Müller; Volker Hickmann; Karl-Peter Hopfner
Journal: Cell Date: 2005-05-06 Impact factor: 41.582

4. Crystal structure and functional implications of Pyrococcus furiosus hef helicase domain involved in branched DNA processing.

Authors: Tatsuya Nishino; Kayoko Komori; Daisuke Tsuchiya; Yoshizumi Ishino; Kosuke Morikawa
Journal: Structure Date: 2005-01 Impact factor: 5.006

5. Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa.

Authors: Toru Sengoku; Osamu Nureki; Akira Nakamura; Satoru Kobayashi; Shigeyuki Yokoyama
Journal: Cell Date: 2006-04-21 Impact factor: 41.582

Review 6. Chromatin remodelling: the industrial revolution of DNA around histones.

Authors: Anjanabha Saha; Jacqueline Wittmeyer; Bradley R Cairns
Journal: Nat Rev Mol Cell Biol Date: 2006-06 Impact factor: 94.444

7. Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome.

Authors: Martin Zofall; Jim Persinger; Stefan R Kassabov; Blaine Bartholomew
Journal: Nat Struct Mol Biol Date: 2006-03-05 Impact factor: 15.369

8. The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA.

Authors: Fulvia Bono; Judith Ebert; Esben Lorentzen; Elena Conti
Journal: Cell Date: 2006-08-25 Impact factor: 41.582

9. Identification of multiple distinct Snf2 subfamilies with conserved structural motifs.

Authors: Andrew Flaus; David M A Martin; Geoffrey J Barton; Tom Owen-Hughes
Journal: Nucleic Acids Res Date: 2006-05-31 Impact factor: 16.971

Review 10. Snf2 family ATPases and DExx box helicases: differences and unifying concepts from high-resolution crystal structures.

Authors: Harald Dürr; Andrew Flaus; Tom Owen-Hughes; Karl-Peter Hopfner
Journal: Nucleic Acids Res Date: 2006-08-25 Impact factor: 16.971

36 in total

1. Proteins: histones and chromatin.

Authors: Patrick Cramer; Cynthia Wolberger
Journal: Curr Opin Struct Biol Date: 2011-11-11 Impact factor: 6.809

2. Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface.

Authors: Alexandra M Deaconescu; Anastasia Sevostyanova; Irina Artsimovitch; Nikolaus Grigorieff
Journal: Proc Natl Acad Sci U S A Date: 2012-02-13 Impact factor: 11.205

3. ZRANB3 is a structure-specific ATP-dependent endonuclease involved in replication stress response.

Authors: Ria Weston; Hanneke Peeters; Dragana Ahel
Journal: Genes Dev Date: 2012-07-03 Impact factor: 11.361

Review 4. Nucleosome remodeling and epigenetics.

Authors: Peter B Becker; Jerry L Workman
Journal: Cold Spring Harb Perspect Biol Date: 2013-09-01 Impact factor: 10.005

5. Uncovering a New Step in Sliding Nucleosomes.

Authors: Gregory D Bowman
Journal: Trends Biochem Sci Date: 2019-06-03 Impact factor: 13.807

Review 6. Chromatin remodeling during glucocorticoid receptor regulated transactivation.

Authors: Heather A King; Kevin W Trotter; Trevor K Archer
Journal: Biochim Biophys Acta Date: 2012-03-06

7. The ATPase domain of ISWI is an autonomous nucleosome remodeling machine.

Authors: Felix Mueller-Planitz; Henrike Klinker; Johanna Ludwigsen; Peter B Becker
Journal: Nat Struct Mol Biol Date: 2012-12-02 Impact factor: 15.369

Review 8. Protein and DNA modifications: evolutionary imprints of bacterial biochemical diversification and geochemistry on the provenance of eukaryotic epigenetics.

Authors: L Aravind; A Maxwell Burroughs; Dapeng Zhang; Lakshminarayan M Iyer
Journal: Cold Spring Harb Perspect Biol Date: 2014-07-01 Impact factor: 10.005

9. Multiple modes of regulation of the human Ino80 SNF2 ATPase by subunits of the INO80 chromatin-remodeling complex.

Authors: Lu Chen; Ronald C Conaway; Joan W Conaway
Journal: Proc Natl Acad Sci U S A Date: 2013-12-02 Impact factor: 11.205

10. Multivalent Chromatin Engagement and Inter-domain Crosstalk Regulate MORC3 ATPase.

Authors: Forest H Andrews; Qiong Tong; Kelly D Sullivan; Evan M Cornett; Yi Zhang; Muzaffar Ali; JaeWoo Ahn; Ahway Pandey; Angela H Guo; Brian D Strahl; James C Costello; Joaquin M Espinosa; Scott B Rothbart; Tatiana G Kutateladze
Journal: Cell Rep Date: 2016-09-20 Impact factor: 9.423