Literature DB >> 21993779

SAPling: a Scan-Add-Print barcoding database system to label and track asexual organisms.

Michael A Thomas1, Eva-Maria Schötz.   

Abstract

We have developed a 'Scan-Add-Print' database system, SAPling, to track and monitor asexually reproducing organisms. Using barcodes to uniquely identify each animal, we can record information on the life of the individual in a computerized database containing its entire family tree. SAPling has enabled us to carry out large-scale population dynamics experiments with thousands of planarians and keep track of each individual. The database stores information such as family connections, birth date, division date and generation. We show that SAPling can be easily adapted to other asexually reproducing organisms and has a strong potential for use in large-scale and/or long-term population and senescence studies as well as studies of clonal diversity. The software is platform-independent, designed for reliability and ease of use, and provided open source from our webpage to allow project-specific customization.

Mesh:

Year:  2011        PMID: 21993779      PMCID: PMC3192020          DOI: 10.1242/jeb.059048

Source DB:  PubMed          Journal:  J Exp Biol        ISSN: 0022-0949            Impact factor:   3.312


  35 in total

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2.  Radical modification of the A-P axis and the evolution of asexual reproduction in Convolutriloba acoels.

Authors:  James M Sikes; Alexandra E Bely
Journal:  Evol Dev       Date:  2008 Sep-Oct       Impact factor: 1.930

3.  Mortality patterns suggest lack of senescence in hydra.

Authors:  D E Martínez
Journal:  Exp Gerontol       Date:  1998-05       Impact factor: 4.032

4.  Degeneration after sexual differentiation in hydra and its relevance to the evolution of aging.

Authors:  Kengo Yoshida; Toshitaka Fujisawa; Jung Shan Hwang; Kazuho Ikeo; Takashi Gojobori
Journal:  Gene       Date:  2006-08-25       Impact factor: 3.688

5.  A mutation in the ATP2 gene abrogates the age asymmetry between mother and daughter cells of the yeast Saccharomyces cerevisiae.

Authors:  Chi-Yung Lai; Ewa Jaruga; Corina Borghouts; S Michal Jazwinski
Journal:  Genetics       Date:  2002-09       Impact factor: 4.562

6.  Genetic structure of a population sample of apomictic dandelions.

Authors:  R G M Van Der Hulst; T H M Mes; M Falque; P Stam; J C M Den Nijs; K Bachmann
Journal:  Heredity (Edinb)       Date:  2003-04       Impact factor: 3.821

7.  Telomerase activity is not related to life history stage in the jellyfish Cassiopea sp.

Authors:  Michiko C Ojimi; Naoko Isomura; Michio Hidaka
Journal:  Comp Biochem Physiol A Mol Integr Physiol       Date:  2008-10-30       Impact factor: 2.320

8.  Purging deleterious mutations under self fertilization: paradoxical recovery in fitness with increasing mutation rate in Caenorhabditis elegans.

Authors:  Levi T Morran; Aki H Ohdera; Patrick C Phillips
Journal:  PLoS One       Date:  2010-12-31       Impact factor: 3.240

9.  MICE, a program to track and monitor animals in animal facilities.

Authors:  K E Boulukos; P Pognonec
Journal:  BMC Genet       Date:  2001-03-08       Impact factor: 2.797

10.  Genetic variation and de novo mutations in the parthenogenetic Caucasian rock lizard Darevskia unisexualis.

Authors:  Tatiana N Badaeva; Daria N Malysheva; Vitaly I Korchagin; Alexei P Ryskov
Journal:  PLoS One       Date:  2008-07-23       Impact factor: 3.240

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  2 in total

1.  Mechanics dictate where and how freshwater planarians fission.

Authors:  Paul T Malinowski; Olivier Cochet-Escartin; Kelson J Kaj; Edward Ronan; Alexander Groisman; Patrick H Diamond; Eva-Maria S Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-25       Impact factor: 11.205

Review 2.  Vertically- and horizontally-transmitted memories - the fading boundaries between regeneration and inheritance in planaria.

Authors:  Moran Neuhof; Michael Levin; Oded Rechavi
Journal:  Biol Open       Date:  2016-09-15       Impact factor: 2.422

  2 in total

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