Literature DB >> 21991593

RAD in the realm of next-generation sequencing technologies.

H C Rowe1, S Renaut, A Guggisberg.   

Abstract

The first North American RAD Sequencing and Genomics Symposium, sponsored by Floragenex (http://www.floragenex.com/radmeeting/), took place in Portland, Oregon (USA) on 19 April 2011. This symposium was convened to promote and discuss the use of restriction-site-associated DNA (RAD) sequencing technologies. RAD sequencing is one of several strategies recently developed to increase the power of data generated via short-read sequencing technologies by reducing their complexity (Baird et al. 2008; Huang et al. 2009; Andolfatto et al. 2011; Elshire et al. 2011). RAD sequencing, as a form of genotyping by sequencing, has been effectively applied in genetic mapping and quantitative trait loci (QTL) analyses in a range of organisms including nonmodel, genetically highly heterogeneous organisms (Table 1; Baird et al. 2008; Baxter et al. 2011; Chutimanitsakun et al. 2011; Pfender et al. 2011). RAD sequencing has recently found applications in phylogeography (Emerson et al. 2010) and population genomics (Hohenlohe et al. 2010). Considering the diversity of talks presented during this meeting, more developments are to be expected in the very near future.

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Year:  2011        PMID: 21991593     DOI: 10.1111/j.1365-294x.2011.05197.x

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  46 in total

1.  Harnessing genomics for delineating conservation units.

Authors:  W Chris Funk; John K McKay; Paul A Hohenlohe; Fred W Allendorf
Journal:  Trends Ecol Evol       Date:  2012-06-21       Impact factor: 17.712

2.  Transcriptome-based SNP discovery by GBS and the construction of a genetic map for olive.

Authors:  Ahmet İpek; Meryem İpek; Sezai Ercişli; Nesrin Aktepe Tangu
Journal:  Funct Integr Genomics       Date:  2017-02-18       Impact factor: 3.410

3.  Challenges and pitfalls in the characterization of anonymous outlier AFLP markers in non-model species: lessons from an ocellated lizard genome scan.

Authors:  V L Nunes; M A Beaumont; R K Butlin; O S Paulo
Journal:  Heredity (Edinb)       Date:  2012-08-15       Impact factor: 3.821

4.  Going where traditional markers have not gone before: utility of and promise for RAD sequencing in marine invertebrate phylogeography and population genomics.

Authors:  A M Reitzel; S Herrera; M J Layden; M Q Martindale; T M Shank
Journal:  Mol Ecol       Date:  2013-03-08       Impact factor: 6.185

5.  Stacks: an analysis tool set for population genomics.

Authors:  Julian Catchen; Paul A Hohenlohe; Susan Bassham; Angel Amores; William A Cresko
Journal:  Mol Ecol       Date:  2013-05-24       Impact factor: 6.185

6.  Fine Mapping of the High-pH Tolerance and Growth Trait-Related Quantitative Trait Loci (QTLs) and Identification of the Candidate Genes in Pacific White Shrimp (Litopenaeus vannamei).

Authors:  Wen Huang; Chuhang Cheng; Jinshang Liu; Xin Zhang; Chunhua Ren; Xiao Jiang; Ting Chen; Kaimin Cheng; Huo Li; Chaoqun Hu
Journal:  Mar Biotechnol (NY)       Date:  2019-11-22       Impact factor: 3.619

7.  Construction of High-Density Genetic Map and Mapping of Sex-Related Loci in the Yellow Catfish (Pelteobagrus fulvidraco).

Authors:  Dong Gao; Min Zheng; Genmei Lin; Wenyu Fang; Jing Huang; Jianguo Lu; Xiaowen Sun
Journal:  Mar Biotechnol (NY)       Date:  2020-01-02       Impact factor: 3.619

8.  Genome-wide SSR markers in bottle gourd: development, characterization, utilization in assessment of genetic diversity of National Genebank of India and synteny with other related cucurbits.

Authors:  Bhawna Bonthala; M Z Abdin; Lalit Arya; Chithra D Pandey; Vedprakash Sharma; Priya Yadav; Manjusha Verma
Journal:  J Appl Genet       Date:  2022-02-01       Impact factor: 3.240

9.  Genomics in eels--towards aquaculture and biology.

Authors:  Yuki Minegishi; Christiaan V Henkel; Ron P Dirks; Guido E E J M van den Thillart
Journal:  Mar Biotechnol (NY)       Date:  2012-04-17       Impact factor: 3.619

10.  DNA marker applications to molecular genetics and genomics in tomato.

Authors:  Kenta Shirasawa; Hideki Hirakawa
Journal:  Breed Sci       Date:  2013-03-01       Impact factor: 2.086

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