Literature DB >> 21989934

The structure, molecular dynamics, and energetics of centrin-melittin complex.

Liliana Del Valle Sosa1, Elisa Alfaro, Jorge Santiago, Daniel Narváez, Marie Cely Rosado, Aslin Rodríguez, Ana María Gómez, Eric R Schreiter, Belinda Pastrana-Ríos.   

Abstract

Centrin is a calcium binding protein (CaBP) belonging to the EF-hand superfamily. As with other proteins within this family, centrin is a calcium sensor with multiple biological target proteins. We chose to study Chlamydomonas reinhardtii centrin (Crcen) and its interaction with melittin (MLT) as a model for CaBP complexes due to its amphipathic properties. Our goal was to determine the molecular interactions that lead to centrin-MLT complex formation, their relative stability, and the conformational changes associated with the interaction, when compared to the single components. For this, we determined the thermodynamic parameters that define Crcen-MLT complex formation. Two-dimensional infrared (2D IR) correlation spectroscopy were used to study the amide I', I'*, and side chain bands for (13)C-Crcen, MLT, and the (13)C-Crcen-MLT complex. This approach resulted in the determination of MLT's increased helicity, while centrin was stabilized within the complex. Herein we provide the first complete molecular description of centrin-MLT complex formation and the dissociation process. Also, discussed is the first structure of a CaBP-MLT complex by X-ray crystallography, which shows that MLT has a different binding orientation than previously characterized centrin-bound peptides. Finally, all of the experimental results presented herein are consistent with centrin maintaining an extended conformation while interacting with MLT. The molecular implications of these results are: (1) the recognition of hydrophobic contacts as requirements for initial binding, (2) minimum electrostatic interactions within the C-terminal end of the peptide, and (3) van der Waals interactions within MLTs N-terminal end are required for complex formation.
Copyright © 2011 Wiley-Liss, Inc.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21989934      PMCID: PMC3204214          DOI: 10.1002/prot.23142

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  43 in total

1.  Structural independence of the two EF-hand domains of caltractin.

Authors:  Sudha Veeraraghavan; Patricia A Fagan; Haitao Hu; Vincent Lee; Jeffrey F Harper; Bessie Huang; Walter J Chazin
Journal:  J Biol Chem       Date:  2002-05-28       Impact factor: 5.157

2.  Structure of the N-terminal calcium sensor domain of centrin reveals the biochemical basis for domain-specific function.

Authors:  Jonathan H Sheehan; Christopher G Bunick; Haitao Hu; Patricia A Fagan; Susan M Meyn; Walter J Chazin
Journal:  J Biol Chem       Date:  2005-11-29       Impact factor: 5.157

3.  Centrin 2 stimulates nucleotide excision repair by interacting with xeroderma pigmentosum group C protein.

Authors:  Ryotaro Nishi; Yuki Okuda; Eriko Watanabe; Toshio Mori; Shigenori Iwai; Chikahide Masutani; Kaoru Sugasawa; Fumio Hanaoka
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

4.  Microcalorimetric investigation of the interactions in the ternary complex calmodulin-calcium-melittin.

Authors:  M Milos; J J Schaer; M Comte; J A Cox
Journal:  J Biol Chem       Date:  1987-02-25       Impact factor: 5.157

Review 5.  Quantitative studies of the structure of proteins in solution by Fourier-transform infrared spectroscopy.

Authors:  J L Arrondo; A Muga; J Castresana; F M Goñi
Journal:  Prog Biophys Mol Biol       Date:  1993       Impact factor: 3.667

6.  Quantitative IR spectrophotometry of peptide compounds in water (H2O) solutions. I. Spectral parameters of amino acid residue absorption bands.

Authors:  N N Kalnin
Journal:  Biopolymers       Date:  1990       Impact factor: 2.505

7.  Dynamics of hydrogen-deuterium exchange in Chlamydomonas centrin.

Authors:  Mildred Ortiz; Zuleika Sanoguet; Haitao Hu; Walter J Chazin; Cynthia T McMurray; Cynthia McMurray; Jeffrey L Salisbury; Belinda Pastrana-Rios
Journal:  Biochemistry       Date:  2005-02-22       Impact factor: 3.162

8.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  13C alpha-NMR assignments of melittin in methanol and chemical shift correlations with secondary structure.

Authors:  P Buckley; A S Edison; M D Kemple; F G Prendergast
Journal:  J Biomol NMR       Date:  1993-11       Impact factor: 2.835

10.  Isotope-edited Fourier transform infrared spectroscopy studies of calmodulin's interaction with its target peptides.

Authors:  M Zhang; H Fabian; H H Mantsch; H J Vogel
Journal:  Biochemistry       Date:  1994-09-13       Impact factor: 3.162

View more
  6 in total

1.  Prp40 Homolog A Is a Novel Centrin Target.

Authors:  Adalberto Díaz Casas; Walter J Chazin; Belinda Pastrana-Ríos
Journal:  Biophys J       Date:  2017-06-20       Impact factor: 4.033

2.  Crystal structure of the trimeric N-terminal domain of ciliate Euplotes octocarinatus centrin binding with calcium ions.

Authors:  Wenming Wang; Yaqin Zhao; Hongfei Wang; Bingsheng Yang
Journal:  Protein Sci       Date:  2018-04-30       Impact factor: 6.725

3.  Helical Structure of Recombinant Melittin.

Authors:  Lisa S Ramirez; Jayanti Pande; Alexander Shekhtman
Journal:  J Phys Chem B       Date:  2019-01-04       Impact factor: 3.466

4.  Trypanosoma brucei centrin5 is enriched in the flagellum and interacts with other centrins in a calcium-dependent manner.

Authors:  Fangzhen Shan; Xiao Yang; Yating Diwu; Haoyu Ma; Xiaoming Tu
Journal:  FEBS Open Bio       Date:  2019-07-09       Impact factor: 2.693

5.  Relative stability of human centrins and its relationship to calcium binding.

Authors:  Belinda Pastrana-Ríos; Myrna Reyes; Jessica De Orbeta; Verónica Meza; Daniel Narváez; Ana María Gómez; Aslin Rodríguez Nassif; Ruth Almodovar; Adalberto Díaz Casas; José Robles; Ana María Ortiz; Lizbeth Irizarry; Melissa Campbell; Mara Colón
Journal:  Biochemistry       Date:  2013-02-06       Impact factor: 3.162

6.  Trifluoroacetic acid as excipient destabilizes melittin causing the selective aggregation of melittin within the centrin-melittin-trifluoroacetic acid complex.

Authors:  Belinda Pastrana-Rios; Liliana Del Valle Sosa; Jorge Santiago
Journal:  Struct Dyn       Date:  2015-05-15       Impact factor: 2.920

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.