Literature DB >> 21986107

Machine learning competition in immunology - Prediction of HLA class I binding peptides.

Guang Lan Zhang, Hifzur Rahman Ansari, Phil Bradley, Gavin C Cawley, Tomer Hertz, Xihao Hu, Nebojsa Jojic, Yohan Kim, Oliver Kohlbacher, Ole Lund, Claus Lundegaard, Craig A Magaret, Morten Nielsen, Harris Papadopoulos, G P S Raghava, Vider-Shalit Tal, Li C Xue, Chen Yanover, Shanfeng Zhu, Michael T Rock, James E Crowe, Christos Panayiotou, Marios M Polycarpou, Włodzisław Duch, Vladimir Brusic.   

Abstract

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Year:  2011        PMID： 21986107     DOI： 10.1016/j.jim.2011.09.010

Source DB:  PubMed          Journal:  J Immunol Methods        ISSN： 0022-1759            Impact factor:   2.303


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  31 in total

1.  Predictions versus high-throughput experiments in T-cell epitope discovery: competition or synergy?

Authors:  Claus Lundegaard; Ole Lund; Morten Nielsen
Journal:  Expert Rev Vaccines       Date:  2012-01       Impact factor: 5.217

2.  Automated benchmarking of peptide-MHC class I binding predictions.

Authors:  Thomas Trolle; Imir G Metushi; Jason A Greenbaum; Yohan Kim; John Sidney; Ole Lund; Alessandro Sette; Bjoern Peters; Morten Nielsen
Journal:  Bioinformatics       Date:  2015-02-25       Impact factor: 6.937

Review 3.  The role of proteomics in the age of immunotherapies.

Authors:  Sarah A Hayes; Stephen Clarke; Nick Pavlakis; Viive M Howell
Journal:  Mamm Genome       Date:  2018-07-25       Impact factor: 2.957

4.  Comparison of experimental fine-mapping to in silico prediction results of HIV-1 epitopes reveals ongoing need for mapping experiments.

Authors:  Julia Roider; Tim Meissner; Franziska Kraut; Thomas Vollbrecht; Renate Stirner; Johannes R Bogner; Rika Draenert
Journal:  Immunology       Date:  2014-10       Impact factor: 7.397

Review 5.  Coevolution of Leukemia and Host Immune Cells in Chronic Lymphocytic Leukemia.

Authors:  Noelia Purroy; Catherine J Wu
Journal:  Cold Spring Harb Perspect Med       Date:  2017-04-03       Impact factor: 6.915

6.  BlockLogo: visualization of peptide and sequence motif conservation.

Authors:  Lars Rønn Olsen; Ulrich Johan Kudahl; Christian Simon; Jing Sun; Christian Schönbach; Ellis L Reinherz; Guang Lan Zhang; Vladimir Brusic
Journal:  J Immunol Methods       Date:  2013-08-31       Impact factor: 2.303

7.  Getting personal with neoantigen-based therapeutic cancer vaccines.

Authors:  Nir Hacohen; Edward F Fritsch; Todd A Carter; Eric S Lander; Catherine J Wu
Journal:  Cancer Immunol Res       Date:  2013-04-07       Impact factor: 11.151

8.  MULTIPRED2: a computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles.

Authors:  Guang Lan Zhang; David S DeLuca; Derin B Keskin; Lou Chitkushev; Tanya Zlateva; Ole Lund; Ellis L Reinherz; Vladimir Brusic
Journal:  J Immunol Methods       Date:  2010-12-02       Impact factor: 2.303

9.  InCoB2012 Conference: from biological data to knowledge to technological breakthroughs.

Authors:  Christian Schönbach; Sissades Tongsima; Jonathan Chan; Vladimir Brusic; Tin Wee Tan; Shoba Ranganathan
Journal:  BMC Bioinformatics       Date:  2012-12-13       Impact factor: 3.169

10.  Mutated BCR-ABL generates immunogenic T-cell epitopes in CML patients.

Authors:  Ann Cai; Derin B Keskin; David S DeLuca; Anselmo Alonso; Wandi Zhang; Guang Lan Zhang; Naa Norkor Hammond; Valentina Nardi; Richard M Stone; Donna Neuberg; John Sidney; Vladimir Brusic; Catherine J Wu
Journal:  Clin Cancer Res       Date:  2012-08-21       Impact factor: 12.531
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