Literature DB >> 21976281

Site-selective versus promiscuous A-to-I editing.

Helene Wahlstedt1, Marie Ohman.   

Abstract

RNA editing by adenosine deamination is acting on polymerase II derived transcripts in all metazoans. Adenosine-to-inosine (A-to-I) editing is mediated by the adenosine deaminase that acts on RNA (ADAR) enzymes. Two types of adenosine to inosine (A-to-I) RNA editing have been defined: site selective and hyper-editing. Typically, in site selectively edited substrates, one or a few A-to-I sites are edited in double-stranded RNA structures, frequently interrupted by single-stranded bulges and loops. Hyper-editing occurs in long stretches of duplex RNA where multiple adenosines are subjected to deamination. In this review, recent findings on editing within noncoding RNA as well as examples of site selective editing within coding regions are presented. We discuss how these two editing events have evolved and the structural differences between a site selective and hyper-edited substrate.
Copyright © 2011 John Wiley & Sons, Ltd.

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Year:  2011        PMID: 21976281     DOI: 10.1002/wrna.89

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  23 in total

1.  Activity-dependent A-to-I RNA editing in rat cortical neurons.

Authors:  Neville E Sanjana; Erez Y Levanon; Emily A Hueske; Jessica M Ambrose; Jin Billy Li
Journal:  Genetics       Date:  2012-06-19       Impact factor: 4.562

Review 2.  The role of Alu elements in the cis-regulation of RNA processing.

Authors:  Chammiran Daniel; Mikaela Behm; Marie Öhman
Journal:  Cell Mol Life Sci       Date:  2015-07-30       Impact factor: 9.261

3.  The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome.

Authors:  Michael C Washburn; Boyko Kakaradov; Balaji Sundararaman; Emily Wheeler; Shawn Hoon; Gene W Yeo; Heather A Hundley
Journal:  Cell Rep       Date:  2014-02-06       Impact factor: 9.423

4.  Noncoding regions of C. elegans mRNA undergo selective adenosine to inosine deamination and contain a small number of editing sites per transcript.

Authors:  Emily C Wheeler; Michael C Washburn; Francois Major; Douglas B Rusch; Heather A Hundley
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

5.  Using multiplex single-base extension typing to screen for mutants defective in RNA editing.

Authors:  Mizuki Takenaka; Axel Brennicke
Journal:  Nat Protoc       Date:  2012-10-04       Impact factor: 13.491

6.  Selective Recognition of RNA Substrates by ADAR Deaminase Domains.

Authors:  Yuru Wang; SeHee Park; Peter A Beal
Journal:  Biochemistry       Date:  2018-02-21       Impact factor: 3.162

7.  One hundred million adenosine-to-inosine RNA editing sites: hearing through the noise.

Authors:  Randi J Ulbricht; Ronald B Emeson
Journal:  Bioessays       Date:  2014-05-30       Impact factor: 4.345

Review 8.  To protect and modify double-stranded RNA - the critical roles of ADARs in development, immunity and oncogenesis.

Authors:  Emily A Erdmann; Ananya Mahapatra; Priyanka Mukherjee; Boyoon Yang; Heather A Hundley
Journal:  Crit Rev Biochem Mol Biol       Date:  2020-12-27       Impact factor: 8.250

9.  Inverted Alu dsRNA structures do not affect localization but can alter translation efficiency of human mRNAs independent of RNA editing.

Authors:  Claire R Capshew; Kristen L Dusenbury; Heather A Hundley
Journal:  Nucleic Acids Res       Date:  2012-06-25       Impact factor: 16.971

10.  A distant cis acting intronic element induces site-selective RNA editing.

Authors:  Chammiran Daniel; Morten T Venø; Ylva Ekdahl; Jørgen Kjems; Marie Öhman
Journal:  Nucleic Acids Res       Date:  2012-07-30       Impact factor: 16.971

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