| Literature DB >> 21975123 |
Hans B Ketelslegers1, Roger W L Godschalk, Ralph W H Gottschalk, Ad M Knaapen, Gudrun Koppen, Greet Schoeters, Willy F Baeyens, Vera Nelen, Joep P M Geraedts, Joost H M van Delft, Jos C S Kleinjans, Nicolas A van Larebeke.
Abstract
BACKGROUND: We hypothesized that in Flanders (Belgium), the prevalence of at-risk genotypes for genotoxic effects decreases with age due to morbidity and mortality resulting from chronic diseases. Rather than polymorphisms in single genes, the interaction of multiple genetic polymorphisms in low penetrance genes involved in genotoxic effects might be of relevance.Entities:
Mesh:
Substances:
Year: 2011 PMID: 21975123 PMCID: PMC3195704 DOI: 10.1186/1476-069X-10-85
Source DB: PubMed Journal: Environ Health ISSN: 1476-069X Impact factor: 5.984
Numbers of persons selected, participating in the Flesh and for whom genotyping was performed
| Invited | Participated (%) | Genotyped1 (%) | |
|---|---|---|---|
| Adolescents | 2870 | 1679 (58.5%) | 442 (15.4%) |
| Adults | 4386 | 1583 (36.1%) | 399 (9.1%) |
1Randomly selected among the participants.
Overview of the selected SNPs, their effect on enzyme function and definition of risk alleles
| Polymorphism | Expected effect on enzymatic function | Putuative Risk Allele | Risk Allele leading to | ||
|---|---|---|---|---|---|
| Higher inducibility | |||||
| Increased formation of reactive metabolites (phase I enzymes) | |||||
| Higher enzyme activity | |||||
| Deletion, no enzyme activity | |||||
| Decreased detoxification of reactive metabolites (phase II enzymes) | |||||
| Decreased enzyme activity | |||||
| Modulated expression | |||||
| Decreased enzyme activity | Decreased DNA repair | ||||
| Increased enzyme activity | |||||
| Decreased enzyme activity | |||||
| Decreased enzyme activity | Decreased DNA repair | ||||
| Decreased enzyme activity | |||||
| Lower catalase activity | Decreased oxidative stress defense | ||||
| Decreased enzyme activity | |||||
| Higher enzyme activity | Higher production of free radicals | ||||
| Less efficient final GSH peroxidaxe complex | Impaired GSH metabolism; higher oxidative stress | ||||
(1)-(4): different multiplex PCRs (See Materials and Methods)
Percentages of adolescents and "elderly" persons with risk alleles
| Gene | Risk Allele | Adolescents % with 1 risk allele | Elderly % with 1 risk allele | Adolescents % with 2 risk alleles | Elderly % with 2 risk alleles | Adolescents mean number of risk alleles | Elderly mean number of risk alleles |
|---|---|---|---|---|---|---|---|
| Biotransformation Phase I | |||||||
| CYP1A2 | -154C | 32.3 | 36.8 | 7.3 | 7.0 | 0,468 | 0,509 |
| CYP1A1 | 3801C | 15.1 | 21.1 | 2.3 | 3.3 | 0,197 | 0,276 |
| CYP1A1 | 462V | 6.9 | 6.3% | 0.0 | 0.0 | 0,069 | 0,063 |
| CYP1A1 | 461N | 7.6 | 7.8 | 0.5 | 0.0 | 0,085 | 0,078 |
| CYP2E1 | -70T | 6.0 | 8.8 | 0.0 | 0.5 | 0,060 | 0,098 |
| CYP3A4 | -391G | 6.0 | 5.8 | 1.1 | 0.5 | 0,083 | 0,068 |
| Biotransformation Phase II | |||||||
| GSTM1 | Del | n.a.1 | n.a.1 | 56.6 | 53.4 | 1,136 | 1,068 |
| GSTT1 | Del | n.a.1 | n.a.1 | 18.4 | 14.3 | 0,367 | 0,286 |
| GSTP1 | 105V | 52.3 | 47.4 | 16.8 | 10.5 | 0,859 | 0,684 |
| GSTP1 | 114V | 12.5 | 14.5 | 2.5 | 1.0 | 0,175 | 0,165 |
| NAT2 | 114T | 49.9 | 49.6 | 30.6 | 19.8 | 1,113 | 0,892 |
| NAT2 | 197Q | 39.9 | 42.9 | 8.8 | 6.5 | 0,576 | 0,559 |
| NAT2 | 286E | 3.9 | 5.5 | 0.0 | 0.3 | 0,039 | 0,060 |
| DNA Repair | |||||||
| BRCA2 | A-26 | 29.9 | 38.2 | 3.7 | 6.1 | 0,375 | 0,504 |
| BRCA2 | 372H | 46.2 | 41.5 | 9.4 | 10.6 | 0,657 | 0,628 |
| XRCC1 | R194 | 11.0 | 12.7 | 0.5 | 0.8 | 0,120 | 0,142 |
| XRCC1 | 280H | 9.7 | 9.4 | 0.5 | 0.3 | 0,108 | 0,099 |
| XRCC3 | 241M | 49.8 | 44.1 | 16.4 | 19.5 | 0,829 | 0,830 |
| XPD | 751Q | 42.8 | 49.9 | 14.5 | 11.1 | 0,720 | 0,722 |
| XPD | 156R | 43.7 | 51.9 | 24.6 | 19.7 | 0,933 | 0,914 |
| APE1 | 148G | 48.3 | 47.5 | 25.2 | 27.9 | 0,989 | 1,033 |
| OGG1 | 326C | 37.2 | 35.9 | 7.1 | 6.6 | 0,517 | 0,491 |
| Oxidative Stresss | |||||||
| mnSOD | 16A | 51.7 | 51.3 | 22.4 | 24.1 | 0,968 | 0,995 |
| CAT | -262T | 30.0 | 31.7 | 9.8 | 8.8 | 0,499 | 0,494 |
| NQO1 | 187S | 13.3 | 5.3 | 0.2 | 0.3 | 0,140 | 0,058 |
| NQO1 | 139W | 31.1 | 31.4 | 4.6 | 4.3 | 0,405 | 0,399 |
| MPO | G-463 | 32.0 | 36.8 | 4.6 | 4.0 | 0,411 | 0,449 |
| GPX1 | 198L | 41.6 | 43.2 | 7.6 | 8.8 | 0,570 | 0,608 |
1Not available
Numbers and percentage of adolescents and "elderly" persons with low versus high numbers of risk alleles
| Chi-Square | ||||
|---|---|---|---|---|
1The cut-off point between low and high sum of risk alleles was based on the median number of risk alleles for each specific pathway. A high number of risk alleles was defined as: Total: > 17 risk alleles; Biotransformation:> 5 risk alleles; Phase I: > 1 risk allele; Phase II: > 4 risk alleles; Oxidative stress: > 4 risk alleles; DNA repair > 8 risk alleles.
Figure 1Numbers of risk alleles in Phase II genes among the adolescents and the 'elderly'. The dashed line represents the cut-off point between the relatively low (≤ 4) and high (> 4) sum of risk alleles (see methods). Compared to the adolescents there are less "elderly" persons with five to eleven risk alleles in phase II genes (p < 0.001). Moreover, the mean number of risk alleles is significantly lower in the 'elderly' population compared to the adolescent population (P < 0.001). As can be seen from the figure, among the "elderly" the group with 4 at risk alleles counts the most subjects, more then hundred (107), whereas among the adolescents the group with 5 at risk alleles counts the most subjects, almost 90 (88).
Figure 2Numbers of risk alleles in DNA repair genes among the adolescents and the 'elderly'. The dashed line represents the cut-off point between the relatively low (≤8) and high (> 8) sum of risk alleles (see methods). The number of persons with nine to fourteen at-risk alleles is smaller among the elderly (p = 0.017). As can be seen from the figure, among the "elderly" the group with 8 at risk alleles counts the most subjects, more then hundred (109), whereas among the adolescents the group with 9 at risk alleles counts the most subjects, more the hundred (104).