Literature DB >> 21972782

Spectroscopic and electronic structure studies probing covalency contributions to C-H bond activation and transition-state stabilization in xanthine oxidase.

Joseph Sempombe1, Benjamin Stein, Martin L Kirk.   

Abstract

A detailed electron paramagnetic resonance (EPR) and computational study of a key paramagnetic form of xanthine oxidase (XO) has been performed and serves as a basis for developing a valence-bond description of C-H activation and transition-state (TS) stabilization along the reaction coordinate with aldehyde substrates. EPR spectra of aldehyde-inhibited XO have been analyzed in order to provide information regarding the relationship between the g, (95,97)Mo hyperfine (A(Mo)), and (13)C hyperfine (A(C)) tensors. Analysis of the EPR spectra has allowed for greater insight into the electronic origin of key delocalizations within the Mo-O(eq)-C fragment and how these contribute to C-H bond activation/cleavage and TS stabilization. A natural bond orbital analysis of the enzyme reaction coordinate with aldehyde substrates shows that both Mo═S π → C-H σ* (ΔE = 24.3 kcal mol(-1)) and C-H σ → Mo═S π* (ΔE = 20.0 kcal mol(-1)) back-donation are important in activating the substrate C-H bond for cleavage. Additional contributions to C-H activation derive from O(eq) lpC-H σ* (lp = lone pair; ΔE = 8.2 kcal mol(-1)) and S lpC-H σ* (ΔE = 13.2 kcal mol(-1)) stabilizing interactions. The O(eq)-donor ligand that derives from water is part of the Mo-O(eq)-C fragment probed in the EPR spectra of inhibited XO, and the observation of O(eq) lpC-H σ* back-donation indicates a key role for O(eq) in activating the substrate C-H bond for cleavage. We also show that the O(eq) donor plays an even more important role in TS stabilization. We find that O(eq) → Mo + C charge transfer dominantly contributes to stabilization of the TS (ΔE = 89.5 kcal mol(-1)) and the Mo-O(eq)-C delocalization pathway reduces strong electronic repulsions that contribute to the classical TS energy barrier. The Mo-O(eq)-C delocalization at the TS allows for the TS to be described in valence-bond terms as a resonance hybrid of the reactant (R) and product (P) valence-bond wave functions.
© 2011 American Chemical Society

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21972782      PMCID: PMC3222092          DOI: 10.1021/ic201477n

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  41 in total

1.  Generalized Gradient Approximation Made Simple.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

2.  Reaction of formaldehyde and of methanol with xanthine oxidase.

Authors:  F M Pick; M A McGartoll; R C Bray
Journal:  Eur J Biochem       Date:  1971-01-01

3.  A theoretical study on the mechanism of the reductive half-reaction of xanthine oxidase.

Authors:  Xin-Hao Zhang; Yun-Dong Wu
Journal:  Inorg Chem       Date:  2005-03-07       Impact factor: 5.165

4.  Understanding the origin of metal-sulfur vibrations in an oxo-molybdenum dithiolene complex: relevance to sulfite oxidase.

Authors:  Frank E Inscore; Sushilla Z Knottenbelt; Nick D Rubie; Hemant K Joshi; Martin L Kirk; John H Enemark
Journal:  Inorg Chem       Date:  2006-02-06       Impact factor: 5.165

5.  Sulfur K-edge spectroscopic investigation of second coordination sphere effects in oxomolybdenum-thiolates: relationship to molybdenum-cysteine covalency and electron transfer in sulfite oxidase.

Authors:  Katrina Peariso; Matthew E Helton; Eileen N Duesler; Susan E Shadle; Martin L Kirk
Journal:  Inorg Chem       Date:  2007-02-19       Impact factor: 5.165

Review 6.  Mammalian molybdo-flavoenzymes, an expanding family of proteins: structure, genetics, regulation, function and pathophysiology.

Authors:  Enrico Garattini; Ralf Mendel; Maria João Romão; Richard Wright; Mineko Terao
Journal:  Biochem J       Date:  2003-05-15       Impact factor: 3.857

7.  Substrate Orientation and Catalysis at the Molybdenum Site in Xanthine Oxidase: CRYSTAL STRUCTURES IN COMPLEX WITH XANTHINE AND LUMAZINE.

Authors:  James M Pauff; Hongnan Cao; Russ Hille
Journal:  J Biol Chem       Date:  2008-12-24       Impact factor: 5.157

8.  Formamide as a substrate of xanthine oxidase.

Authors:  F F Morpeth; G N George; R C Bray
Journal:  Biochem J       Date:  1984-05-15       Impact factor: 3.857

Review 9.  Review of research leading to new anti-herpesvirus agents in clinical development: valaciclovir hydrochloride (256U, the L-valyl ester of acyclovir) and 882C, a specific agent for varicella zoster virus.

Authors:  D J Purifoy; L M Beauchamp; P de Miranda; P Ertl; S Lacey; G Roberts; S G Rahim; G Darby; T A Krenitsky; K L Powell
Journal:  J Med Virol       Date:  1993       Impact factor: 2.327

10.  Nature of the oxomolybdenum-thiolate pi-bond: implications for Mo-S bonding in sulfite oxidase and xanthine oxidase.

Authors:  Rebecca L McNaughton; Matthew E Helton; Michele Mader Cosper; John H Enemark; Martin L Kirk
Journal:  Inorg Chem       Date:  2004-03-08       Impact factor: 5.165

View more
  10 in total

Review 1.  The mononuclear molybdenum enzymes.

Authors:  Russ Hille; James Hall; Partha Basu
Journal:  Chem Rev       Date:  2014-01-28       Impact factor: 60.622

2.  Xanthine oxidase-product complexes probe the importance of substrate/product orientation along the reaction coordinate.

Authors:  Jing Yang; Chao Dong; Martin L Kirk
Journal:  Dalton Trans       Date:  2017-10-10       Impact factor: 4.390

3.  Pulsed electron paramagnetic resonance spectroscopy of (33)S-labeled molybdenum cofactor in catalytically active bioengineered sulfite oxidase.

Authors:  Eric L Klein; Abdel Ali Belaidi; Arnold M Raitsimring; Amanda C Davis; Tobias Krämer; Andrei V Astashkin; Frank Neese; Günter Schwarz; John H Enemark
Journal:  Inorg Chem       Date:  2014-01-03       Impact factor: 5.165

4.  Correlating C-H bond cleavage with molybdenum reduction in xanthine oxidase.

Authors:  Martin L Kirk; Abebe Berhane
Journal:  Chem Biodivers       Date:  2012-09       Impact factor: 2.408

Review 5.  Electronic structure contributions to reactivity in xanthine oxidase family enzymes.

Authors:  Benjamin W Stein; Martin L Kirk
Journal:  J Biol Inorg Chem       Date:  2014-11-26       Impact factor: 3.358

6.  Orbital contributions to CO oxidation in Mo-Cu carbon monoxide dehydrogenase.

Authors:  Benjamin W Stein; Martin L Kirk
Journal:  Chem Commun (Camb)       Date:  2014-02-04       Impact factor: 6.222

7.  Molybdenum and Tungsten Cofactors and the Reactions They Catalyze.

Authors:  Martin L Kirk; Khadanand Kc
Journal:  Met Ions Life Sci       Date:  2020-03-23

8.  (13)C and (63,65)Cu ENDOR studies of CO dehydrogenase from Oligotropha carboxidovorans. Experimental evidence in support of a copper-carbonyl intermediate.

Authors:  Muralidharan Shanmugam; Jarett Wilcoxen; Diana Habel-Rodriguez; George E Cutsail; Martin L Kirk; Brian M Hoffman; Russ Hille
Journal:  J Am Chem Soc       Date:  2013-11-19       Impact factor: 15.419

Review 9.  Spectroscopic Studies of Mononuclear Molybdenum Enzyme Centers.

Authors:  Martin L Kirk; Russ Hille
Journal:  Molecules       Date:  2022-07-27       Impact factor: 4.927

10.  Oxidation-State-Dependent Binding Properties of the Active Site in a Mo-Containing Formate Dehydrogenase.

Authors:  William E Robinson; Arnau Bassegoda; Erwin Reisner; Judy Hirst
Journal:  J Am Chem Soc       Date:  2017-07-17       Impact factor: 15.419

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.