Literature DB >> 21967641

Testing DNA barcoding in closely related groups of Lysimachia L. (Myrsinaceae).

Cai-Yun Zhang1, Feng-Ying Wang, Hai-Fei Yan, Gang Hao, Chi-Ming Hu, Xue-Jun Ge.   

Abstract

It has been suggested that rbcL and matK are the core barcodes in plants, but they are not powerful enough to distinguish between closely related plant groups. Additional barcodes need to be evaluated to improve the level of discrimination between plant species. Because of their well-studied taxonomy and extreme diversity, we used Chinese Lysimachia (Myrsinaceae) species to test the performance of core barcodes (rbcL and matK) and two additional candidate barcodes (trnH-psbA and the nuclear ribosomal ITS); 97 accessions from four subgenus representing 34 putative Lysimachia species were included in this study. And many closely related species pairs in subgen. Lysimachia were covered to detect their discriminatory power. The inefficiency of rbcL and matK alone or combined in closely related plant groups was validated in this study. TrnH-psbA combined with rbcL + matK did not yet perform well in Lysimachia groups. In contrast, ITS, alone or combined with rbcL and/or matK, revealed high resolving ability in Lysimachia. We support ITS as a supplementary barcode on the basis of core barcode rbcL and matK. Besides, this study also illustrates several mistakes or underlying evolutionary events in Lysimachia detected by DNA barcoding.
© 2011 Blackwell Publishing Ltd.

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Year:  2011        PMID: 21967641     DOI: 10.1111/j.1755-0998.2011.03076.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  42 in total

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4.  DNA barcoding the Canadian Arctic flora: core plastid barcodes (rbcL + matK) for 490 vascular plant species.

Authors:  Jeffery M Saarela; Paul C Sokoloff; Lynn J Gillespie; Laurie L Consaul; Roger D Bull
Journal:  PLoS One       Date:  2013-10-22       Impact factor: 3.240

5.  Efficiency of ITS sequences for DNA barcoding in Passiflora (Passifloraceae).

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7.  Plant DNA Barcode as a Tool for Root Identification in Hypogea: The Case of the Etruscan Tombs of Tarquinia (Central Italy).

Authors:  Daniela Isola; Flavia Bartoli; Simone Langone; Simona Ceschin; Laura Zucconi; Giulia Caneva
Journal:  Plants (Basel)       Date:  2021-06-03

8.  Stability and accuracy assessment of identification of traditional Chinese materia medica using DNA barcoding: a case study on Flos Lonicerae Japonicae.

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9.  Identification of species and materia medica within Angelica L. (Umbelliferae) based on phylogeny inferred from DNA barcodes.

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Journal:  Mol Ecol Resour       Date:  2014-07-10       Impact factor: 7.090

10.  DNA barcoding of perennial fruit tree species of agronomic interest in the genus Annona (Annonaceae).

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Journal:  Front Plant Sci       Date:  2015-07-30       Impact factor: 5.753

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