Literature DB >> 21963300

Origins and consequences of transcriptional discontinuity.

David M Suter1, Nacho Molina, Felix Naef, Ueli Schibler.   

Abstract

In both prokaryotes and eukaryotes, transcription has been described as being temporally discontinuous, most genes being active mainly during short activity windows interspersed by silent periods. In mammalian cells, recent studies performed at the single cell level have revealed that transcriptional kinetics are highly gene-specific and constrained by the presence of refractory periods of inactivity before a gene can be turned on again. While the underlying mechanisms generating gene-specific kinetic characteristics remain unclear, various biological consequences of transcriptional discontinuity have been unravelled during the past few years. Here we review recent advances on understanding transcriptional kinetics of individual genes at the single cell level and discuss its possible origins and consequences.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21963300     DOI: 10.1016/j.ceb.2011.09.004

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  23 in total

1.  Transcriptional Bursting and Co-bursting Regulation by Steroid Hormone Release Pattern and Transcription Factor Mobility.

Authors:  Diana A Stavreva; David A Garcia; Gregory Fettweis; Prabhakar R Gudla; George F Zaki; Vikas Soni; Andrew McGowan; Geneva Williams; Anh Huynh; Murali Palangat; R Louis Schiltz; Thomas A Johnson; Diego M Presman; Matthew L Ferguson; Gianluca Pegoraro; Arpita Upadhyaya; Gordon L Hager
Journal:  Mol Cell       Date:  2019-08-14       Impact factor: 17.970

2.  Two methods for full-length RNA sequencing for low quantities of cells and single cells.

Authors:  Xinghua Pan; Russell E Durrett; Haiying Zhu; Yoshiaki Tanaka; Yumei Li; Xiaoyuan Zi; Sadie L Marjani; Ghia Euskirchen; Chao Ma; Robert H Lamotte; In-Hyun Park; Michael P Snyder; Christopher E Mason; Sherman M Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-24       Impact factor: 11.205

3.  Transcriptional burst frequency and burst size are equally modulated across the human genome.

Authors:  Roy D Dar; Brandon S Razooky; Abhyudai Singh; Thomas V Trimeloni; James M McCollum; Chris D Cox; Michael L Simpson; Leor S Weinberger
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-11       Impact factor: 11.205

4.  Stimulus-induced modulation of transcriptional bursting in a single mammalian gene.

Authors:  Nacho Molina; David M Suter; Rosamaria Cannavo; Benjamin Zoller; Ivana Gotic; Félix Naef
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

Review 5.  Dynamic regulation of transcriptional states by chromatin and transcription factors.

Authors:  Ty C Voss; Gordon L Hager
Journal:  Nat Rev Genet       Date:  2013-12-17       Impact factor: 53.242

6.  Biased allelic expression in human primary fibroblast single cells.

Authors:  Christelle Borel; Pedro G Ferreira; Federico Santoni; Olivier Delaneau; Alexandre Fort; Konstantin Y Popadin; Marco Garieri; Emilie Falconnet; Pascale Ribaux; Michel Guipponi; Ismael Padioleau; Piero Carninci; Emmanouil T Dermitzakis; Stylianos E Antonarakis
Journal:  Am J Hum Genet       Date:  2014-12-31       Impact factor: 11.025

7.  Rapid transcriptional pulsing dynamics of high expressing retroviral transgenes in embryonic stem cells.

Authors:  Mandy Y M Lo; Sylvie Rival-Gervier; Peter Pasceri; James Ellis
Journal:  PLoS One       Date:  2012-05-14       Impact factor: 3.240

Review 8.  Molecular architecture of the mammalian circadian clock.

Authors:  Carrie L Partch; Carla B Green; Joseph S Takahashi
Journal:  Trends Cell Biol       Date:  2013-08-01       Impact factor: 20.808

Review 9.  CDK9 keeps RNA polymerase II on track.

Authors:  Sylvain Egloff
Journal:  Cell Mol Life Sci       Date:  2021-06-19       Impact factor: 9.261

10.  Epigenetic Control of Circadian Clock Operation during Development.

Authors:  Chengwei Li; Changxia Gong; Shuang Yu; Jianguo Wu; Xiaodong Li
Journal:  Genet Res Int       Date:  2012-03-18
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