Literature DB >> 21956041

Implications of gene copy-number variation in health and diseases.

Suhani H Almal1, Harish Padh.   

Abstract

Inter-individual genomic variations have recently become evident with advances in sequencing techniques and genome-wide array comparative genomic hybridization. Among such variations single nucleotide polymorphisms (SNPs) are widely studied and better defined because of availability of large-scale detection platforms. However, insertion-deletions, inversions, copy-number variations (CNVs) also populate our genomes. The large structural variations (>3 Mb) have been known for past 20 years, however, their link to health and disease remain ill-defined. CNVs are defined as the segment of DNA >1 kb in size, and compared with reference genome vary in its copy number. All these types of genomic variations are bound to have vital role in disease susceptibility and drug response. In this review, the discussion is confined to CNVs and their link to health, diseases and drug response. There are several CNVs reported till date, which have important roles in an individual's susceptibility to several complex and common disorders. This review compiles some of these CNVs and analyzes their involvement in diseases in different populations, analyses available evidence and rationalizes their involvement in the development of disease phenotype. Combined with SNP, additional genomic variations including CNV, will provide better correlations between individual genomic variations and health.

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Year:  2011        PMID: 21956041     DOI: 10.1038/jhg.2011.108

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.172


  42 in total

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Journal:  Int J Legal Med       Date:  2014-08-27       Impact factor: 2.686

2.  Association between copy-number variation on metabolic phenotypes and HDL-C levels in patients with polycystic ovary syndrome.

Authors:  Birgit Knebel; Stefan Lehr; Onno E Janssen; Susanne Hahn; Sylvia Jacob; Ulrike Nitzgen; Dirk Müller-Wieland; Jorg Kotzka
Journal:  Mol Biol Rep       Date:  2016-11-22       Impact factor: 2.316

3.  Characterization of copy number variants for CCL3L1 gene in rheumatoid arthritis for French trio families and Tunisian cases and controls.

Authors:  Mohamed Sahbi Ben Kilani; Yosser Achour; Javier Perea; François Cornelis; Thomas Bardin; Valérie Chaudru; Abdellatif Maalej; Elisabeth Petit-Teixeira
Journal:  Clin Rheumatol       Date:  2016-01-04       Impact factor: 2.980

4.  Therapeutic effects of microRNA-582-5p and -3p on the inhibition of bladder cancer progression.

Authors:  Keita Uchino; Fumitaka Takeshita; Ryou-U Takahashi; Nobuyoshi Kosaka; Kae Fujiwara; Haruna Naruoka; Satoru Sonoke; Junichi Yano; Hideo Sasaki; Shiari Nozawa; Miki Yoshiike; Kazuki Kitajima; Tatsuya Chikaraishi; Takahiro Ochiya
Journal:  Mol Ther       Date:  2013-01-08       Impact factor: 11.454

5.  A Homozygous Ancestral SVA-Insertion-Mediated Deletion in WDR66 Induces Multiple Morphological Abnormalities of the Sperm Flagellum and Male Infertility.

Authors:  Zine-Eddine Kherraf; Amir Amiri-Yekta; Denis Dacheux; Thomas Karaouzène; Charles Coutton; Marie Christou-Kent; Guillaume Martinez; Nicolas Landrein; Pauline Le Tanno; Selima Fourati Ben Mustapha; Lazhar Halouani; Ouafi Marrakchi; Mounir Makni; Habib Latrous; Mahmoud Kharouf; Karin Pernet-Gallay; Hamid Gourabi; Derrick R Robinson; Serge Crouzy; Michael Blum; Nicolas Thierry-Mieg; Aminata Touré; Raoudha Zouari; Christophe Arnoult; Mélanie Bonhivers; Pierre F Ray
Journal:  Am J Hum Genet       Date:  2018-08-16       Impact factor: 11.025

6.  Estimating copy numbers of alleles from population-scale high-throughput sequencing data.

Authors:  Takahiro Mimori; Naoki Nariai; Kaname Kojima; Yukuto Sato; Yosuke Kawai; Yumi Yamaguchi-Kabata; Masao Nagasaki
Journal:  BMC Bioinformatics       Date:  2015-01-21       Impact factor: 3.169

7.  Type 2 Diabetes Genetics: Beyond GWAS.

Authors:  Dharambir K Sanghera; Piers R Blackett
Journal:  J Diabetes Metab       Date:  2012-06-23

8.  Leukocyte-specific protein 1 regulates T-cell migration in rheumatoid arthritis.

Authors:  Seong-Hye Hwang; Seung-Hyun Jung; Saseong Lee; Susanna Choi; Seung-Ah Yoo; Ji-Hwan Park; Daehee Hwang; Seung Cheol Shim; Laurent Sabbagh; Ki-Jo Kim; Sung Hwan Park; Chul-Soo Cho; Bong-Sung Kim; Lin Leng; Ruth R Montgomery; Richard Bucala; Yeun-Jun Chung; Wan-Uk Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-09       Impact factor: 11.205

9.  Relationship between TSHR, BRAF and PIK3CA gene copy number variations and thyroid nodules.

Authors:  Xiaoli Shi; Mengying Qu; Xing Jin; Lixiang Liu; Fangang Meng; Hongmei Shen
Journal:  Endocrine       Date:  2021-01-11       Impact factor: 3.633

10.  Copy number alteration profiling facilitates differential diagnosis between ossifying fibroma and fibrous dysplasia of the jaws.

Authors:  Ming Ma; Lu Liu; Ruirui Shi; Jianyun Zhang; Xiaotian Li; Xuefen Li; Jiaying Bai; Jianbin Wang; Yanyi Huang; Tiejun Li
Journal:  Int J Oral Sci       Date:  2021-06-30       Impact factor: 6.344

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