Literature DB >> 21952546

Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus.

I King Jordan1, Andrew B Conley, Ivan V Antonov, Robert A Arthur, Erin D Cook, Guy P Cooper, Bernard L Jones, Kristen M Knipe, Kevin J Lee, Xing Liu, Gabriel J Mitchell, Pushkar R Pande, Robert A Petit, Shaopu Qin, Vani N Rajan, Shruti Sarda, Aswathy Sebastian, Shiyuyun Tang, Racchit Thapliyal, Neha J Varghese, Tianjun Ye, Lee S Katz, Xin Wang, Lori Rowe, Michael Frace, Leonard W Mayer.   

Abstract

We report the first whole-genome sequences for five strains, two carried and three pathogenic, of the emerging pathogen Haemophilus haemolyticus. Preliminary analyses indicate that these genome sequences encode markers that distinguish H. haemolyticus from its closest Haemophilus relatives and provide clues to the identity of its virulence factors.

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Year:  2011        PMID： 21952546      PMCID： PMC3187195          DOI： 10.1128/JB.05863-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Authors:  J Besemer; A Lomsadze; M Borodovsky
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

2.  Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.

Authors:  Bastien Chevreux; Thomas Pfisterer; Bernd Drescher; Albert J Driesel; Werner E G Müller; Thomas Wetter; Sándor Suhai
Journal:  Genome Res       Date:  2004-05-12       Impact factor: 9.043

3.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

4.  Haemophilus influenzae type b infection, vaccination, and H. influenzae carriage in children in Minnesota, 2008-2009.

Authors:  S A Lowther; N Shinoda; B A Juni; M J Theodore; X Wang; S L Jawahir; M L Jackson; A Cohn; R Danila; R Lynfield
Journal:  Epidemiol Infect       Date:  2011-05-18       Impact factor: 2.451

Review 5.  Infections due to Haemophilus species other than H. influenzae.

Authors:  W L Albritton
Journal:  Annu Rev Microbiol       Date:  1982       Impact factor: 15.500

6.  A computational genomics pipeline for prokaryotic sequencing projects.

Authors:  Andrey O Kislyuk; Lee S Katz; Sonia Agrawal; Matthew S Hagen; Andrew B Conley; Pushkala Jayaraman; Viswateja Nelakuditi; Jay C Humphrey; Scott A Sammons; Dhwani Govil; Raydel D Mair; Kathleen M Tatti; Maria L Tondella; Brian H Harcourt; Leonard W Mayer; I King Jordan
Journal:  Bioinformatics       Date:  2010-06-02       Impact factor: 6.937

7.  Relationships of nontypeable Haemophilus influenzae strains to hemolytic and nonhemolytic Haemophilus haemolyticus strains.

Authors:  Kirk W McCrea; Jingping Xie; Nathan LaCross; Mayurika Patel; Deepa Mukundan; Timothy F Murphy; Carl F Marrs; Janet R Gilsdorf
Journal:  J Clin Microbiol       Date:  2007-11-26       Impact factor: 5.948

8.  Pharyngeal colonization dynamics of Haemophilus influenzae and Haemophilus haemolyticus in healthy adult carriers.

Authors:  Deepa Mukundan; Zafer Ecevit; Mayuri Patel; Carl F Marrs; Janet R Gilsdorf
Journal:  J Clin Microbiol       Date:  2007-08-08       Impact factor: 5.948

9.  Delineation of the species Haemophilus influenzae by phenotype, multilocus sequence phylogeny, and detection of marker genes.

Authors:  Niels Nørskov-Lauritsen; Merete D Overballe; Mogens Kilian
Journal:  J Bacteriol       Date:  2008-12-05       Impact factor: 3.490

10.  Minimus: a fast, lightweight genome assembler.

Authors:  Daniel D Sommer; Arthur L Delcher; Steven L Salzberg; Mihai Pop
Journal:  BMC Bioinformatics       Date:  2007-02-26       Impact factor: 3.169
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  13 in total

1.  An invasive Haemophilus haemolyticus isolate.

Authors:  Daniel J Morton; Randy J Hempel; Paul W Whitby; Thomas W Seale; Terrence L Stull
Journal:  J Clin Microbiol       Date:  2012-02-01       Impact factor: 5.948

2.  Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities.

Authors:  Joel E Kostka; Stefan J Green; Lavanya Rishishwar; Om Prakash; Lee S Katz; Leonardo Mariño-Ramírez; I King Jordan; Christine Munk; Natalia Ivanova; Natalia Mikhailova; David B Watson; Steven D Brown; Anthony V Palumbo; Scott C Brooks
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

3.  Identification of Haemophilus influenzae and Haemophilus haemolyticus by matrix-assisted laser desorption ionization-time of flight mass spectrometry.

Authors:  J P Bruin; M Kostrzewa; A van der Ende; P Badoux; R Jansen; S A Boers; B M W Diederen
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2013-09-10       Impact factor: 3.267

4.  Comparative Genomic Analysis of Haemophilus haemolyticus and Nontypeable Haemophilus influenzae and a New Testing Scheme for Their Discrimination.

Authors:  Fang Hu; Lavanya Rishishwar; Ambily Sivadas; Gabriel J Mitchell; I King Jordan; Timothy F Murphy; Janet R Gilsdorf; Leonard W Mayer; Xin Wang
Journal:  J Clin Microbiol       Date:  2016-10-05       Impact factor: 5.948

5.  Comparative Analyses of the Lipooligosaccharides from Nontypeable Haemophilus influenzae and Haemophilus haemolyticus Show Differences in Sialic Acid and Phosphorylcholine Modifications.

Authors:  Deborah M B Post; Margaret R Ketterer; Jeremy E Coffin; Lorri M Reinders; Robert S Munson; Thomas Bair; Timothy F Murphy; Eric D Foster; Bradford W Gibson; Michael A Apicella
Journal:  Infect Immun       Date:  2016-01-04       Impact factor: 3.441

6.  Complete Deletion of the Fucose Operon in Haemophilus influenzae Is Associated with a Cluster in Multilocus Sequence Analysis-Based Phylogenetic Group II Related to Haemophilus haemolyticus: Implications for Identification and Typing.

Authors:  Camilla de Gier; Lea-Ann S Kirkham; Niels Nørskov-Lauritsen
Journal:  J Clin Microbiol       Date:  2015-09-16       Impact factor: 5.948

Review 7.  Classification, identification, and clinical significance of Haemophilus and Aggregatibacter species with host specificity for humans.

Authors:  Niels Nørskov-Lauritsen
Journal:  Clin Microbiol Rev       Date:  2014-04       Impact factor: 26.132

8.  Haemophilus haemolyticus isolates causing clinical disease.

Authors:  Raydel Anderson; Xin Wang; Elizabeth C Briere; Lee S Katz; Amanda C Cohn; Thomas A Clark; Nancy E Messonnier; Leonard W Mayer
Journal:  J Clin Microbiol       Date:  2012-05-09       Impact factor: 5.948

9.  Molecular surveillance of true nontypeable Haemophilus influenzae: an evaluation of PCR screening assays.

Authors:  Michael J Binks; Beth Temple; Lea-Ann Kirkham; Selma P Wiertsema; Eileen M Dunne; Peter C Richmond; Robyn L Marsh; Amanda J Leach; Heidi C Smith-Vaughan
Journal:  PLoS One       Date:  2012-03-28       Impact factor: 3.240

10.  Phylogenomic and molecular demarcation of the core members of the polyphyletic pasteurellaceae genera actinobacillus, haemophilus, and pasteurella.

Authors:  Sohail Naushad; Mobolaji Adeolu; Nisha Goel; Bijendra Khadka; Aqeel Al-Dahwi; Radhey S Gupta
Journal:  Int J Genomics       Date:  2015-03-03       Impact factor: 2.326
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