Literature DB >> 21952543

Genome sequence of Thermotoga sp. strain RQ2, a hyperthermophilic bacterium isolated from a geothermally heated region of the seafloor near Ribeira Quente, the Azores.

Kristen S Swithers1, Jonathan L DiPippo, David C Bruce, Christopher Detter, Roxanne Tapia, Shunsheng Han, Elizabeth Saunders, Lynne A Goodwin, James Han, Tanja Woyke, Sam Pitluck, Len Pennacchio, Matthew Nolan, Natalia Mikhailova, Athanasios Lykidis, Miriam L Land, Thomas Brettin, Karl O Stetter, Karen E Nelson, J Peter Gogarten, Kenneth M Noll.   

Abstract

Thermotoga sp. strain RQ2 is probably a strain of Thermotoga maritima. Its complete genome sequence allows for an examination of the extent and consequences of gene flow within Thermotoga species and strains. Thermotoga sp. RQ2 differs from T. maritima in its genes involved in myo-inositol metabolism. Its genome also encodes an apparent fructose phosphotransferase system (PTS) sugar transporter. This operon is also found in Thermotoga naphthophila strain RKU-10 but no other Thermotogales. These are the first reported PTS transporters in the Thermotogales.

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Year:  2011        PMID： 21952543      PMCID： PMC3187219          DOI： 10.1128/JB.05923-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

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Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Phylogenetic analyses of two "archaeal" genes in thermotoga maritima reveal multiple transfers between archaea and bacteria.

Authors:  C L Nesbo; S L'Haridon; K O Stetter; W F Doolittle
Journal:  Mol Biol Evol       Date:  2001-03       Impact factor: 16.240

7.  CRITICA: coding region identification tool invoking comparative analysis.

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9.  Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima.

Authors:  Camilla L Nesbø; Karen E Nelson; W Ford Doolittle
Journal:  J Bacteriol       Date:  2002-08       Impact factor: 3.490

10.  Targeting clusters of transferred genes in Thermotoga maritima.

Authors:  Camilla L Nesbø; W Ford Doolittle
Journal:  Environ Microbiol       Date:  2003-11       Impact factor: 5.491
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  8 in total

1.  Construction and Validation of a Genome-Scale Metabolic Network of Thermotoga sp. Strain RQ7.

Authors:  Jyotshana Gautam; Zhaohui Xu
Journal:  Appl Biochem Biotechnol       Date:  2020-11-17       Impact factor: 2.926

2.  Diversity and versatility of the Thermotoga maritima sugar kinome.

Authors:  Irina A Rodionova; Chen Yang; Xiaoqing Li; Oleg V Kurnasov; Aaron A Best; Andrei L Osterman; Dmitry A Rodionov
Journal:  J Bacteriol       Date:  2012-08-10       Impact factor: 3.490

3.  A novel highly thermostable xylanase stimulated by Ca2+ from Thermotoga thermarum: cloning, expression and characterization.

Authors:  Hao Shi; Yu Zhang; Xun Li; Yingjuan Huang; Liangliang Wang; Ye Wang; Huaihai Ding; Fei Wang
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4.  Horizontal gene transfer and genome evolution in Methanosarcina.

Authors:  Sofya K Garushyants; Marat D Kazanov; Mikhail S Gelfand
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5.  Draft Genome Sequence of Thermotoga maritima A7A Reconstructed from Metagenomic Sequencing Analysis of a Hydrocarbon Reservoir in the Bass Strait, Australia.

Authors:  Brodie Sutcliffe; David J Midgley; Carly P Rosewarne; Paul Greenfield; Dongmei Li
Journal:  Genome Announc       Date:  2013-09-05

6.  Complete genome sequence of Thermotoga sp. strain RQ7.

Authors:  Zhaohui Xu; Rutika Puranik; Junxi Hu; Hui Xu; Dongmei Han
Journal:  Stand Genomic Sci       Date:  2017-10-11

7.  Vitamin B(12) synthesis and salvage pathways were acquired by horizontal gene transfer to the Thermotogales.

Authors:  Kristen S Swithers; Amanda K Petrus; Michael A Secinaro; Camilla L Nesbø; J Peter Gogarten; Kenneth M Noll; Nicholas C Butzin
Journal:  Genome Biol Evol       Date:  2012-07-12       Impact factor: 3.416

8.  Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima.

Authors:  Dmitry A Rodionov; Irina A Rodionova; Xiaoqing Li; Dmitry A Ravcheev; Yekaterina Tarasova; Vasiliy A Portnoy; Karsten Zengler; Andrei L Osterman
Journal:  Front Microbiol       Date:  2013-08-23       Impact factor: 5.640
  8 in total

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