Literature DB >> 21947921

Longitudinal exchange: an alternative strategy towards quantification of dynamics parameters in ZZ exchange spectroscopy.

Karin Kloiber1, Romana Spitzer, Sarina Grutsch, Christoph Kreutz, Martin Tollinger.   

Abstract

Longitudinal exchange experiments facilitate the quantification of the rates of interconversion between the exchanging species, along with their longitudinal relaxation rates, by analyzing the time-dependence of direct correlation and exchange cross peaks. Here we present a simple and robust alternative to this strategy, which is based on the combination of two complementary experiments, one with and one without resolving exchange cross peaks. We show that by combining the two data sets systematic errors that are caused by differential line-broadening of the exchanging species are avoided and reliable quantification of kinetic and relaxation parameters in the presence of additional conformational exchange on the ms-μs time scale is possible. The strategy is applied to a bistable DNA oligomer that displays different line-broadening in the two exchanging species.

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Year:  2011        PMID: 21947921      PMCID: PMC3180593          DOI: 10.1007/s10858-011-9547-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  14 in total

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6.  Comparison of the backbone dynamics of a folded and an unfolded SH3 domain existing in equilibrium in aqueous buffer.

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8.  Effect of adenine methylation on the structure and dynamics of TpA steps in DNA: NMR structure determination of [d(CGAGGTTTAAACCTCG)]2 and its A9-methylated derivative at 750 MHz.

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9.  TROSY-selected ZZ-exchange experiment for characterizing slow chemical exchange in large proteins.

Authors:  Ying Li; Arthur G Palmer
Journal:  J Biomol NMR       Date:  2009-11-05       Impact factor: 2.835

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Review 2.  Methyl-Based NMR Spectroscopy Methods for Uncovering Structural Dynamics in Large Proteins and Protein Complexes.

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4.  Synthesis and incorporation of 13C-labeled DNA building blocks to probe structural dynamics of DNA by NMR.

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  6 in total

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