Literature DB >> 21947330

A conserved regulatory element in the mammalian β-globin promoters.

Ryoiti Kiyama1, Yuko Wada-Kiyama.   

Abstract

We provide here evidence for a conserved regulatory element for transcription of the β-family globin genes based on a comparative study of 32 genes from 16 mammals. The element is characterized by the appearance of AA or TT dinucleotides in the A + T-rich region located 200-400 bp upstream of the cap sites. G-tracts 3-5 nucleotides long exist between the A + T-rich region and the conserved transcription factor binding sites (GATA-1 site and the CACCC, CCAAT, and ATA boxes) apparently dividing the regions. The average periodicity of AA or TT dinucleotides in the region from a total of 18 β-family globin genes from four species was approximately 10 bp, suggesting that the DNA in these regions shows right-handed superhelicity. The proposed biological function of this element is to adjust the spatial positions for the first interaction of the transcription factor(s) which can recognize specific DNA sequences in the presence of packed chromatin.

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Year:  2011        PMID: 21947330     DOI: 10.1007/s00239-011-9459-y

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  25 in total

1.  DNA bend sites in the human beta-globin locus: evidence for a basic and universal structural component of genomic DNA.

Authors:  Y Wada-Kiyama; K Suzuki; R Kiyama
Journal:  Mol Biol Evol       Date:  1999-07       Impact factor: 16.240

2.  Conservation of DNA bend sites with identical superhelical twists among the human, mouse, bovine, rabbit and chicken beta-globin genes.

Authors:  C Wanapirak; Y Onishi; Y Wada-Kiyama; T Ohyama; R Kiyama
Journal:  DNA Res       Date:  2000-08-31       Impact factor: 4.458

Review 3.  What positions nucleosomes?--A model.

Authors:  Ryoiti Kiyama; Edward N Trifonov
Journal:  FEBS Lett       Date:  2002-07-17       Impact factor: 4.124

4.  Localization of curved DNA and its association with nucleosome phasing in the promoter region of the human estrogen receptor alpha gene.

Authors:  Y Wada-Kiyama; K Kuwabara; Y Sakuma; Y Onishi; E N Trifonov; R Kiyama
Journal:  FEBS Lett       Date:  1999-02-05       Impact factor: 4.124

5.  Heterogeneity of chromatin subunits in vitro and location of histone H1.

Authors:  A J Varshavsky; V V Bakayev; G P Georgiev
Journal:  Nucleic Acids Res       Date:  1976-02       Impact factor: 16.971

6.  An intrachromosomal repeating unit based on DNA bending.

Authors:  Y Wada-Kiyama; R Kiyama
Journal:  Mol Cell Biol       Date:  1996-10       Impact factor: 4.272

7.  Ligand-dependent transcriptional enhancement by DNA curvature between two half motifs of the estrogen response element in the human estrogen receptor alpha gene.

Authors:  Xiao-man Li; Yoshiaki Onishi; Kentaro Kuwabara; Jeung-yon Rho; Yuko Wada-Kiyama; Yasuo Sakuma; Ryoiti Kiyama
Journal:  Gene       Date:  2002-07-10       Impact factor: 3.688

8.  Histone H2A.Z is essential for estrogen receptor signaling.

Authors:  Nicolas Gévry; Sara Hardy; Pierre-Etienne Jacques; Liette Laflamme; Amy Svotelis; François Robert; Luc Gaudreau
Journal:  Genes Dev       Date:  2009-06-10       Impact factor: 11.361

9.  Evolutionary conservation and functional synergism of curved DNA at the mouse epsilon- and other globin-gene promoters.

Authors:  Chanane Wanapirak; Megumi Kato; Yoshiaki Onishi; Yuko Wada-Kiyama; Ryoiti Kiyama
Journal:  J Mol Evol       Date:  2003-06       Impact factor: 2.395

Review 10.  Regulation of gene transcription by mitogen-activated protein kinase signaling pathways.

Authors:  Alan J Whitmarsh
Journal:  Biochim Biophys Acta       Date:  2006-11-17
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