Literature DB >> 21943906

Building a kinetic model of trehalose biosynthesis in Saccharomyces cerevisiae.

Kieran Smallbone1, Naglis Malys, Hanan L Messiha, Jill A Wishart, Evangelos Simeonidis.   

Abstract

In this chapter, we describe the steps needed to create a kinetic model of a metabolic pathway based on kinetic data from experimental measurements and literature review. Our methodology is presented by utilizing the example of trehalose metabolism in yeast. The biology of the trehalose cycle is briefly reviewed and discussed.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID： 21943906     DOI： 10.1016/B978-0-12-385118-5.00018-9

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


  5 in total

1.  Causal inference in biology networks with integrated belief propagation.

Authors:  Rui Chang; Jonathan R Karr; Eric E Schadt
Journal:  Pac Symp Biocomput       Date:  2015

2.  Predicting Metabolic Adaptation Under Dynamic Substrate Conditions Using a Resource-Dependent Kinetic Model: A Case Study Using Saccharomyces cerevisiae.

Authors:  K J A Verhagen; S A Eerden; B J Sikkema; S A Wahl
Journal:  Front Mol Biosci       Date:  2022-05-16

3.  A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes.

Authors:  Kieran Smallbone; Hanan L Messiha; Kathleen M Carroll; Catherine L Winder; Naglis Malys; Warwick B Dunn; Ettore Murabito; Neil Swainston; Joseph O Dada; Farid Khan; Pınar Pir; Evangelos Simeonidis; Irena Spasić; Jill Wishart; Dieter Weichart; Neil W Hayes; Daniel Jameson; David S Broomhead; Stephen G Oliver; Simon J Gaskell; John E G McCarthy; Norman W Paton; Hans V Westerhoff; Douglas B Kell; Pedro Mendes
Journal:  FEBS Lett       Date:  2013-07-04       Impact factor: 4.124

4.  Selection on Network Dynamics Drives Differential Rates of Protein Domain Evolution.

Authors:  Brian K Mannakee; Ryan N Gutenkunst
Journal:  PLoS Genet       Date:  2016-07-05       Impact factor: 5.917

5.  Age-correlated stress resistance improves fitness of yeast: support from agent-based simulations.

Authors:  Ferdi L Hellweger; Neil D Fredrick; John A Berges
Journal:  BMC Syst Biol       Date:  2014-02-15
  5 in total

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