Literature DB >> 21943897

Nucleic acid programmable protein array a just-in-time multiplexed protein expression and purification platform.

Ji Qiu1, Joshua LaBaer.   

Abstract

Systematic study of proteins requires the availability of thousands of proteins in functional format. However, traditional recombinant protein expression and purification methods have many drawbacks for such study at the proteome level. We have developed an innovative in situ protein expression and capture system, namely NAPPA (nucleic acid programmable protein array), where C-terminal tagged proteins are expressed using an in vitro expression system and efficiently captured/purified by antitag antibodies coprinted at each spot. The NAPPA technology presented in this chapter enable researchers to produce and display fresh proteins just in time in a multiplexed high-throughput fashion and utilize them for various downstream biochemical researches of interest. This platform could revolutionize the field of functional proteomics with it ability to produce thousands of spatially separated proteins in high density with narrow dynamic rand of protein concentrations, reproducibly and functionally.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21943897      PMCID: PMC3484980          DOI: 10.1016/B978-0-12-385118-5.00009-8

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  21 in total

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2.  Recombinational cloning.

Authors:  Jaehong Park; Joshua Labaer
Journal:  Curr Protoc Mol Biol       Date:  2006-05

3.  Printing protein arrays from DNA arrays.

Authors:  Mingyue He; Oda Stoevesandt; Elizabeth A Palmer; Farid Khan; Olle Ericsson; Michael J Taussig
Journal:  Nat Methods       Date:  2008-01-20       Impact factor: 28.547

4.  Building a human kinase gene repository: bioinformatics, molecular cloning, and functional validation.

Authors:  Jaehong Park; Yanhui Hu; T V S Murthy; Fredrik Vannberg; Binghua Shen; Andreas Rolfs; Jessica E Hutti; Lewis C Cantley; Joshua Labaer; Ed Harlow; Leonardo Brizuela
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-31       Impact factor: 11.205

5.  Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.

Authors:  Yanhui Hu; Andreas Rolfs; Bhupinder Bhullar; Tellamraju V S Murthy; Cong Zhu; Michael F Berger; Anamaria A Camargo; Fontina Kelley; Seamus McCarron; Daniel Jepson; Aaron Richardson; Jacob Raphael; Donna Moreira; Elena Taycher; Dongmei Zuo; Stephanie Mohr; Michael F Kane; Janice Williamson; Andrew Simpson; Martha L Bulyk; Edward Harlow; Gerald Marsischky; Richard D Kolodner; Joshua LaBaer
Journal:  Genome Res       Date:  2007-02-23       Impact factor: 9.043

6.  The Pseudomonas aeruginosa PA01 gene collection.

Authors:  Joshua Labaer; Qingqing Qiu; Anukanth Anumanthan; Wenhong Mar; Dongmei Zuo; T V S Murthy; Helen Taycher; Allison Halleck; Eugenie Hainsworth; Stephen Lory; Leonardo Brizuela
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

7.  Self-assembling protein microarrays.

Authors:  Niroshan Ramachandran; Eugenie Hainsworth; Bhupinder Bhullar; Samuel Eisenstein; Benjamin Rosen; Albert Y Lau; Johannes C Walter; Joshua LaBaer
Journal:  Science       Date:  2004-07-02       Impact factor: 47.728

8.  Application of protein microarrays for multiplexed detection of antibodies to tumor antigens in breast cancer.

Authors:  Karen S Anderson; Niroshan Ramachandran; Jessica Wong; Jacob V Raphael; Eugenie Hainsworth; Gokhan Demirkan; Daniel Cramer; Dina Aronzon; F Stephen Hodi; Lyndsay Harris; Tanya Logvinenko; Joshua LaBaer
Journal:  J Proteome Res       Date:  2008-02-27       Impact factor: 4.466

9.  A full-genomic sequence-verified protein-coding gene collection for Francisella tularensis.

Authors:  Tal Murthy; Andreas Rolfs; Yanhui Hu; Zhenwei Shi; Jacob Raphael; Donna Moreira; Fontina Kelley; Seamus McCarron; Daniel Jepson; Elena Taycher; Dongmei Zuo; Stephanie E Mohr; Mauricio Fernandez; Leonardo Brizuela; Joshua LaBaer
Journal:  PLoS One       Date:  2007-06-27       Impact factor: 3.240

10.  A biomedically enriched collection of 7000 human ORF clones.

Authors:  Andreas Rolfs; Yanhui Hu; Lars Ebert; Dietmar Hoffmann; Dongmei Zuo; Niro Ramachandran; Jacob Raphael; Fontina Kelley; Seamus McCarron; Daniel A Jepson; Binghua Shen; Munira M A Baqui; Joseph Pearlberg; Elena Taycher; Craig DeLoughery; Andreas Hoerlein; Bernhard Korn; Joshua LaBaer
Journal:  PLoS One       Date:  2008-01-30       Impact factor: 3.240

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  12 in total

1.  High density diffusion-free nanowell arrays.

Authors:  Bharath R Takulapalli; Ji Qiu; D Mitchell Magee; Peter Kahn; Al Brunner; Kristi Barker; Steven Means; Shane Miersch; Xiaofang Bian; Alex Mendoza; Fernanda Festa; Karan Syal; Jin G Park; Joshua LaBaer; Peter Wiktor
Journal:  J Proteome Res       Date:  2012-07-13       Impact factor: 4.466

2.  Antiviral antibody profiling by high-density protein arrays.

Authors:  Xiaofang Bian; Peter Wiktor; Peter Kahn; Al Brunner; Amritpal Khela; Kailash Karthikeyan; Kristi Barker; Xiaobo Yu; Mitch Magee; Clive H Wasserfall; David Gibson; Madeleine E Rooney; Ji Qiu; Joshua LaBaer
Journal:  Proteomics       Date:  2015-05-15       Impact factor: 3.984

3.  Programmable protein arrays for immunoprofiling HPV-associated cancers.

Authors:  Radwa Ewaisha; Ian Meshay; Jack Resnik; Benjamin A Katchman; Karen S Anderson
Journal:  Proteomics       Date:  2016-04-04       Impact factor: 3.984

4.  High-throughput screening for native autoantigen-autoantibody complexes using antibody microarrays.

Authors:  Jung-hyun Rho; Paul D Lampe
Journal:  J Proteome Res       Date:  2013-03-29       Impact factor: 4.466

5.  High-throughput identification of proteins with AMPylation using self-assembled human protein (NAPPA) microarrays.

Authors:  Xiaobo Yu; Joshua LaBaer
Journal:  Nat Protoc       Date:  2015-04-16       Impact factor: 13.491

6.  Proteomic mapping of p53 immunogenicity in pancreatic, ovarian, and breast cancers.

Authors:  Benjamin A Katchman; Rodrigo Barderas; Rizwan Alam; Diego Chowell; Matthew S Field; Laura J Esserman; Garrick Wallstrom; Joshua LaBaer; Daniel W Cramer; Michael A Hollingsworth; Karen S Anderson
Journal:  Proteomics Clin Appl       Date:  2016-05-17       Impact factor: 3.494

7.  Serum profiling using protein microarrays to identify disease related antigens.

Authors:  Donald Sharon; Michael Snyder
Journal:  Methods Mol Biol       Date:  2014

8.  Immunological biomarkers: catalysts for translational advances in autoimmune diabetes.

Authors:  S T Ahmed; E Akirav; E Bradshaw; J Buckner; E McKinney; F J Quintana; F Waldron-Lynch; J Nepom
Journal:  Clin Exp Immunol       Date:  2013-05       Impact factor: 4.330

9.  Discovering Protein-Protein Interactions Using Nucleic Acid Programmable Protein Arrays.

Authors:  Yanyang Tang; Ji Qiu; Matthias Machner; Joshua LaBaer
Journal:  Curr Protoc Cell Biol       Date:  2017-03-03

10.  Tracking the Antibody Immunome in Sporadic Colorectal Cancer by Using Antigen Self-Assembled Protein Arrays.

Authors:  María González-González; José María Sayagués; Luis Muñoz-Bellvís; Carlos Eduardo Pedreira; Marcello L R de Campos; Jacinto García; José Antonio Alcázar; Patrick F Braz; Breno L Galves; Luis Miguel González; Oscar Bengoechea; María Del Mar Abad; Juan Jesús Cruz; Lorena Bellido; Emilio Fonseca; Paula Díez; Pablo Juanes-Velasco; Alicia Landeira-Viñuela; Quentin Lecrevisse; Enrique Montalvillo; Rafael Góngora; Oscar Blanco; José Manuel Sánchez-Santos; Joshua LaBaer; Alberto Orfao; Manuel Fuentes
Journal:  Cancers (Basel)       Date:  2021-05-31       Impact factor: 6.639

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