Literature DB >> 21936009

Insights into the structural stability of Bax from molecular dynamics simulations at high temperatures.

Jorge Luis Rosas-Trigueros1, José Correa-Basurto, Claudia Guadalupe Benítez-Cardoza, Absalom Zamorano-Carrillo.   

Abstract

Bax is a member of the Bcl-2 protein family that participates in mitochondrion-mediated apoptosis. In the early stages of the apoptotic pathway, this protein migrates from the cytosol to the outer mitochondrial membrane, where it is inserted and usually oligomerizes, making cytochrome c-compatible pores. Although several cellular and structural studies have been reported, a description of the stability of Bax at the molecular level remains elusive. This article reports molecular dynamics simulations of monomeric Bax at 300, 400, and 500 K, focusing on the most relevant structural changes and relating them to biological experimental results. Bax gradually loses its α-helices when it is submitted to high temperatures, yet it maintains its globular conformation. The resistance of Bax to adopt an extended conformation could be due to several interactions that were found to be responsible for maintaining the structural stability of this protein. Among these interactions, we found salt bridges, hydrophobic interactions, and hydrogen bonds. Remarkably, salt bridges were the most relevant to prevent the elongation of the structure. In addition, the analysis of our results suggests which conformational movements are implicated in the activation/oligomerization of Bax. This atomistic description might have important implications for understanding the functionality and stability of Bax in vitro as well as within the cellular environment.
Copyright © 2011 The Protein Society.

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Year:  2011        PMID: 21936009      PMCID: PMC3302647          DOI: 10.1002/pro.740

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  60 in total

1.  Conformational change of proteins arising from normal mode calculations.

Authors:  F Tama; Y H Sanejouand
Journal:  Protein Eng       Date:  2001-01

2.  Structure of Bax: coregulation of dimer formation and intracellular localization.

Authors:  M Suzuki; R J Youle; N Tjandra
Journal:  Cell       Date:  2000-11-10       Impact factor: 41.582

3.  Charge-charge interactions influence the denatured state ensemble and contribute to protein stability.

Authors:  C N Pace; R W Alston; K L Shaw
Journal:  Protein Sci       Date:  2000-07       Impact factor: 6.725

4.  Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic.

Authors:  W G Krebs; Vadim Alexandrov; Cyrus A Wilson; Nathaniel Echols; Haiyuan Yu; Mark Gerstein
Journal:  Proteins       Date:  2002-09-01

5.  ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement.

Authors:  Karsten Suhre; Yves-Henri Sanejouand
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

Review 6.  Role of Bcl-2 family members in immunity and disease.

Authors:  Nathalie M Droin; Douglas R Green
Journal:  Biochim Biophys Acta       Date:  2004-03-01

7.  Study of the stability and unfolding mechanism of BBA1 by molecular dynamics simulations at different temperatures.

Authors:  L Wang; Y Duan; R Shortle; B Imperiali; P A Kollman
Journal:  Protein Sci       Date:  1999-06       Impact factor: 6.725

8.  Activation of the beta 2-adrenergic receptor involves disruption of an ionic lock between the cytoplasmic ends of transmembrane segments 3 and 6.

Authors:  J A Ballesteros; A D Jensen; G Liapakis; S G Rasmussen; L Shi; U Gether; J A Javitch
Journal:  J Biol Chem       Date:  2001-05-25       Impact factor: 5.157

Review 9.  Structural biology of the Bcl-2 family of proteins.

Authors:  Andrew M Petros; Edward T Olejniczak; Stephen W Fesik
Journal:  Biochim Biophys Acta       Date:  2004-03-01

Review 10.  Bcl-2 family members and disease.

Authors:  Christine M Sorenson
Journal:  Biochim Biophys Acta       Date:  2004-03-01
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  2 in total

1.  The importance of evolutionarily conserved C-terminal basic residues for the stability of proapoptotic Bax protein.

Authors:  Jorge L Rosas-Trigueros
Journal:  FEBS Open Bio       Date:  2016-08-25       Impact factor: 2.693

2.  Conformational Heterogeneity of Bax Helix 9 Dimer for Apoptotic Pore Formation.

Authors:  Chenyi Liao; Zhi Zhang; Justin Kale; David W Andrews; Jialing Lin; Jianing Li
Journal:  Sci Rep       Date:  2016-07-06       Impact factor: 4.379

  2 in total

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