| Literature DB >> 21931527 |
Sanjeev Kumar Ranjan1, Chandana Basu Mallick, Dipnarayan Saha, Ambarish S Vidyarthi, Ranganathan Ramani.
Abstract
THE LAC INSECTS (HOMOPTERA: Tachardiidae), belonging to the genus Kerria, are commercially exploited for the production of lac. Kerria lacca is the most commonly used species in India. RAPD markers were used for assessing genetic variation in forty-eight lines of Kerria, especially among geographic races, infrasubspecific forms, cultivated lines, inbred lines, etc., of K. lacca. In the 48 lines studied, the 26 RAPD primers generated 173 loci, showing 97.7% polymorphism. By using neighbor-joining, the dendrogram generated from the similarity matrix resolved the lines into basically two clusters and outgroups. The major cluster, comprising 32 lines, included mainly cultivated lines of the rangeeni form, geographic races and inbred lines of K. lacca. The second cluster consisted of eight lines of K. lacca, seven of the kusmi form and one of the rangeeni from the southern state of Karnataka. The remaining eight lines formed a series of outgroups, this including a group of three yellow mutant lines of K. lacca and other species of the Kerria studied, among others. Color mutants always showed distinctive banding patterns compared to their wild-type counterparts from the same population. This study also adds support to the current status of kusmi and rangeeni, as infraspecific forms of K. lacca.Entities:
Keywords: DNA fingerprinting; Kerria; RAPD; Tachardiidae; genetic variation; lac insects
Year: 2011 PMID: 21931527 PMCID: PMC3168195 DOI: 10.1590/S1415-47572011000300023
Source DB: PubMed Journal: Genet Mol Biol ISSN: 1415-4757 Impact factor: 1.771
Details of the 48 lines of Kerria studied, including coding and place of collection.
| Group/Nature | Number used to indicate the location on the map | Code No. | Place of collection |
|---|---|---|---|
| I | |||
| 1 | LI003 | Silli, Jharkhand | |
| 2 | LI011 | Ranchi, Jharkhand | |
| 3 | LI019A | Bokaro, Jharkhand, yellow | |
| 3 | LI019B | Bokaro, Jharkhand, crimson | |
| 4 | LI032 | Kirnapur, Madhya Pradesh | |
| 5 | LI042 | Mainpur, Chhattisgarh | |
| 6 | LI044 | Jhalda, West Bengal | |
| 7 | LI048 | Kalamati, Jharkhand | |
| 8 | LI087 | Vardha (Guna), Madhya Pradesh | |
| 9 | LI005 | Ranchi, Jharkhand | |
| 10 | LI012 | Purulia, West Bengal | |
| 11 | LI025 | Putidih, West Bengal | |
| 12 | LI026 | Chandai, West Bengal | |
| 13 | LI027 | Nawadih, Jharkhand | |
| 14 | LI028 | Kulajanga, West Bengal | |
| 15 | LI036 | Kurubhatta, Chhattisgarh | |
| 16 | LI075 | Kalamati, West Bengal | |
| 17 | LI077 | Hesadih, Jharkhand | |
| II | |||
| Northern | 18 | LI072B | Varanasi, Uttar Pradesh |
| Northern | 19 | LI073 | Bhathat, Uttar Pradesh |
| Eastern | 20 | LI029 | Ashok Nagar, Ranchi, Jharkhand |
| Eastern | 21 | LI031 | Rajendra Chowk, Ranchi, Jharkhand |
| Eastern | 22 | LI078 | Orissa, |
| Western | 23 | LI004 | Simbalpani, Gujarat |
| Western | 24 | LI018 | Manasarovar, Gujarat |
| Western | 25 | LI006 | Pushkar, Rajasthan |
| Western | 26 | LI069 | Chargaon, Maharashtra |
| Western | 27 | LI015 | Simbalpani, Gujarat, yellow |
| Western | 28 | LI013 | Alsipur, Gujarat, yellow |
| Central | 29 | LI085 | Guna, Madhya Pradesh |
| Southern | 30 | LI009A | Thrissur, Kerala, yellow |
| Southern | 30 | LI009B | Thrissur, Kerala, crimson |
| Southern | 31 | LI079 | Bangalore, Karnataka |
| Southern | 32 | LI082 | Vishakapatnam, Andhra Pradesh |
| Southern | 33 | LI010RR | Echoda, Andhra Pradesh |
| III | |||
| Inbred line 3, | - | LI007 | Kundri, Jharkhand |
| Inbred line 8 | - | LI008 | Kundri, Jharkhand |
| Inbred line 1 | - | LI014 | Kundri, Jharkhand |
| Inbred line 6 | - | LI020 | Kundri, Jharkhand |
| Inbred line 9 | - | LI022 | Kundri, Jharkhand |
| Inbred line 13 | - | LI024 | Kundri, Jharkhand |
| Crossbred line 1 (13f x 8m) | - | LI058 | Kundri, Jharkhand |
| Crossbred line 2 (13f x 3m) | - | LI061 | Kundri, Jharkhand |
| Cream line, recombinant, crimson | - | LI001B | Kundri, Jharkhand |
| Cream line, recombinant, cream | - | LI001A | Kundri, Jharkhand |
| IV other species | |||
| 33 | LI002 | Nangpoh, Meghalaya, India | |
| 34 | LI066 | Sarat, Orissa | |
| - | LI068 | Thailand | |
Field collected. The exact locations of certain collections are unavailable.
Figure 1Map of India, showing State boundaries, collection sites of the cultivated lines, and geographic races of K. lacca and other species of Kerria studied (A: Jharkhand, B: Chhattisgarh, C: West Bengal, D: Madhya Pradesh, E: Uttar Pradesh, F: Orissa, G: Gujarat, H: Rajasthan, I: Maharshtra, J: Kerala, K: Karnataka, L: Andhra Pradesh, M: Meghalaya). Inset – the states of Jharkhand and West Bengal.
The list of primers used, their sequences, Tm, number of bands generated, size-range and degree of polymorphism.
| Primers | Primer sequence (5′-3′) | Tm (°C) | Total number of scored bands | Band-size range (bp) | No. of polymorphic bands (%) |
|---|---|---|---|---|---|
| OPS9 | TCCTGGTCCC | 42 | 3 | 200–1000 | 2 (66.6%) |
| OPS10 | ACCGTTCCAG | 42 | 7 | 200–1500 | 6 (85.7%) |
| OPS12 | CTGGGTGAGT | 42 | 1 | 600 | 1 (100%) |
| OPS13 | GTCGTTCCTG | 42 | 10 | 300–1200 | 10 (100%) |
| OPS14 | AAAGGGGTCC | 42 | 6 | 400–1850 | 6 (100%) |
| OPS15 | CAGTTCACGG | 42 | 4 | 600–1500 | 4 (100%) |
| OPS16 | AGGGGGTTCC | 42 | 1 | 700 | 1 (100%) |
| OPS17 | TGGGGACCAC | 42 | 7 | 600–1500 | 7 (100%) |
| OPS19 | GAGTCAGCAG | 42 | 12 | 300–1200 | 11 (91.7%) |
| OPS20 | TCTGGACGGA | 42 | 8 | 500–2000 | 8 (100%) |
| OPT5 | GGGTTTGGCA | 37 | 10 | 200–1000 | 10 (100%) |
| OPT7 | GGCAGGCTG | 37 | 11 | 400–1600 | 11 (100%) |
| OPT15 | GGATGCCACT | 37 | 8 | 200–950 | 8 (100%) |
| OPT16 | GGTGAACGCT | 37 | 10 | 300–1700 | 9 (90%) |
| OPH5 | AGTCGTCCCC | 37 | 10 | 450–2000 | 10 (100%) |
| OPH9 | TGTAGCTGGG | 37 | 5 | 400–1300 | 5 (100%) |
| OPH12 | ACGCGCATGT | 37 | 9 | 400–1300 | 9 (100%) |
| OPH19 | CTGACCAGCC | 37 | 10 | 600–1900 | 10 (100%) |
| OPB4 | GGACTGGAGT | 37 | 4 | 600–1400 | 4 (100%) |
| OPB15 | GGAGGGTGTT | 37 | 4 | 600–1600 | 4 (100%) |
| OPB18 | CCACAGCAGT | 37 | 4 | 600–1300 | 4 (100%) |
| OPA2 | TGCCGAGCTG | 42 | 8 | 300–1500 | 8 (100%) |
| OPA10 | GTGATCGCAG | 42.5 | 3 | 800–1600 | 3 (100%) |
| OPA9 | GGGTAACGCC | 42 | 7 | 600–1250 | 7 (100%) |
| OPA18 | AGGTGACCGT | 42.5 | 4 | 350–1200 | 4 (100%) |
| OPA13 | CAGCACCCAC | 42 | 7 | 400–1400 | 7 (100%) |
Figure 2Dendrogram showing phenetic relationship of 48 lines of Kerria, generated from Jaccard’s similarity coefficients, based on RAPD data, and using the neighbour-joining method.
Figure 33-D plot generated from principal coordinate analysis of RAPD similarity matrix data from the forty-eight lines of Kerria.