Literature DB >> 21930220

Reappraisal of the "Molecular phylogeny of Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora)": when poor science meets GenBank.

Dick S J Groenenberg1, Eike Neubert, Edmund Gittenberger.   

Abstract

A paper on the 'Molecular phylogeny of Western Palaearctic Helicidae s.l.', published by Steinke et al. (2004) in this journal, is critically analysed. Several obvious errors are corrected and methodological weaknesses are revealed. BLAST searches on the sequences published in that paper and now in GenBank, showed high percentages of similarity of the alleged species with taxa that are considered only distantly related in the literature. Inspection of the so-called voucher specimens showed that some shells were misidentified, whereas others contained dirt or were bleached, indicating that these had been collected empty. Obviously the sequences published for those species could not have originated from those specimens, which cannot be considered vouchers therefore, even if they are from the same locality. In other instances, spurious sequences were published for correctly identified voucher specimens. For several species for which we collected specimens ourselves, the COI or the 16S sequence, or both, clearly differed from the results published by Steinke et al. The consequences of our results for the molecular data on helicid gastropods and their classification are listed.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21930220     DOI: 10.1016/j.ympev.2011.08.024

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  7 in total

1.  The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing.

Authors:  Dick S J Groenenberg; Walter Pirovano; Edmund Gittenberger; Menno Schilthuizen
Journal:  BMC Genomics       Date:  2012-03-26       Impact factor: 3.969

2.  The HTS barcode checker pipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data.

Authors:  Youri Lammers; Tamara Peelen; Rutger A Vos; Barbara Gravendeel
Journal:  BMC Bioinformatics       Date:  2014-02-06       Impact factor: 3.169

3.  Intermediate hosts of Protostrongylus pulmonalis (Frölich, 1802) and P. oryctolagi Baboš, 1955 under natural conditions in France.

Authors:  Célia Lesage; Cécile Patrelle; Sylvain Vrignaud; Anouk Decors; Hubert Ferté; Damien Jouet
Journal:  Parasit Vectors       Date:  2015-02-15       Impact factor: 3.876

4.  Two complete mitochondrial genomes from Praticolella mexicana Perez, 2011 (Polygyridae) and gene order evolution in Helicoidea (Mollusca, Gastropoda).

Authors:  Russell L Minton; Marco A Martinez Cruz; Mark L Farman; Kathryn E Perez
Journal:  Zookeys       Date:  2016-10-25       Impact factor: 1.546

5.  The complete mitogenome of Orcula dolium (Draparnaud, 1801); ultra-deep sequencing from a single long-range PCR using the Ion-Torrent PGM.

Authors:  D S J Groenenberg; J Harl; E Duijm; E Gittenberger
Journal:  Hereditas       Date:  2017-04-04       Impact factor: 3.271

6.  A reference library for Canadian invertebrates with 1.5 million barcodes, voucher specimens, and DNA samples.

Authors:  Jeremy R deWaard; Sujeevan Ratnasingham; Evgeny V Zakharov; Alex V Borisenko; Dirk Steinke; Angela C Telfer; Kate H J Perez; Jayme E Sones; Monica R Young; Valerie Levesque-Beaudin; Crystal N Sobel; Arusyak Abrahamyan; Kyrylo Bessonov; Gergin Blagoev; Stephanie L deWaard; Chris Ho; Natalia V Ivanova; Kara K S Layton; Liuqiong Lu; Ramya Manjunath; Jaclyn T A McKeown; Megan A Milton; Renee Miskie; Norm Monkhouse; Suresh Naik; Nadya Nikolova; Mikko Pentinsaari; Sean W J Prosser; Adriana E Radulovici; Claudia Steinke; Connor P Warne; Paul D N Hebert
Journal:  Sci Data       Date:  2019-12-06       Impact factor: 6.444

7.  Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera.

Authors:  Marko Mutanen; Sami M Kivelä; Rutger A Vos; Camiel Doorenweerd; Sujeevan Ratnasingham; Axel Hausmann; Peter Huemer; Vlad Dincă; Erik J van Nieukerken; Carlos Lopez-Vaamonde; Roger Vila; Leif Aarvik; Thibaud Decaëns; Konstantin A Efetov; Paul D N Hebert; Arild Johnsen; Ole Karsholt; Mikko Pentinsaari; Rodolphe Rougerie; Andreas Segerer; Gerhard Tarmann; Reza Zahiri; H Charles J Godfray
Journal:  Syst Biol       Date:  2016-06-10       Impact factor: 9.160

  7 in total

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