Literature DB >> 21929028

Power spectra methods for a stochastic description of diffusion on deterministically growing domains.

Thomas E Woolley1, Ruth E Baker, Eamonn A Gaffney, Philip K Maini.   

Abstract

A central challenge in developmental biology is understanding the creation of robust spatiotemporal heterogeneity. Generally, the mathematical treatments of biological systems have used continuum, mean-field hypotheses for their constituent parts, which ignores any sources of intrinsic stochastic effects. In this paper we consider a stochastic space-jump process as a description of diffusion, i.e., particles are able to undergo a random walk on a discretized domain. By developing analytical Fourier methods we are able to probe this probabilistic framework, which gives us insight into the patterning potential of diffusive systems. Further, an alternative description of domain growth is introduced, with which we are able to rigorously link the mean-field and stochastic descriptions. Finally, through combining these ideas, it is shown that such stochastic descriptions of diffusion on a deterministically growing domain are able to support the nucleation of states that are far removed from the deterministic mean-field steady state.

Mesh:

Year:  2011        PMID: 21929028     DOI: 10.1103/PhysRevE.84.021915

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  7 in total

1.  Turing's model for biological pattern formation and the robustness problem.

Authors:  Philip K Maini; Thomas E Woolley; Ruth E Baker; Eamonn A Gaffney; S Seirin Lee
Journal:  Interface Focus       Date:  2012-02-08       Impact factor: 3.906

2.  The pseudo-compartment method for coupling partial differential equation and compartment-based models of diffusion.

Authors:  Christian A Yates; Mark B Flegg
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

3.  Graph-facilitated resonant mode counting in stochastic interaction networks.

Authors:  Michael F Adamer; Thomas E Woolley; Heather A Harrington
Journal:  J R Soc Interface       Date:  2017-12       Impact factor: 4.118

4.  Boundary Conditions Cause Different Generic Bifurcation Structures in Turing Systems.

Authors:  Thomas E Woolley
Journal:  Bull Math Biol       Date:  2022-08-11       Impact factor: 3.871

5.  EPHA2-dependent outcompetition of KRASG12D mutant cells by wild-type neighbors in the adult pancreas.

Authors:  William Hill; Andreas Zaragkoulias; Beatriz Salvador-Barbero; Geraint J Parfitt; Markella Alatsatianos; Ana Padilha; Sean Porazinski; Thomas E Woolley; Jennifer P Morton; Owen J Sansom; Catherine Hogan
Journal:  Curr Biol       Date:  2021-04-22       Impact factor: 10.834

6.  Frequency spectrum of chemical fluctuation: A probe of reaction mechanism and dynamics.

Authors:  Sanggeun Song; Gil-Suk Yang; Seong Jun Park; Sungguan Hong; Ji-Hyun Kim; Jaeyoung Sung
Journal:  PLoS Comput Biol       Date:  2019-09-16       Impact factor: 4.475

7.  Coloured Noise from Stochastic Inflows in Reaction-Diffusion Systems.

Authors:  Michael F Adamer; Heather A Harrington; Eamonn A Gaffney; Thomas E Woolley
Journal:  Bull Math Biol       Date:  2020-03-20       Impact factor: 1.758

  7 in total

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