Literature DB >> 21927531

The additive risk model for estimation of effect of haplotype match in BMT studies.

Thomas H Scheike1, Torben Martinussen, Mei-Jie Zhang.   

Abstract

In this paper we consider a problem from bone marrow transplant (BMT) studies where there is interest on assessing the effect of haplotype match for donor and patient on the overall survival. The BMT study we consider is based on donors and patients that are genotype matched, and this therefore leads to a missing data problem. We show how Aalen's additive risk model can be applied in this setting with the benefit that the time-varying haplo-match effect can be easily studied. This problem has not been considered before, and the standard approach where one would use the EM-algorithm cannot be applied for this model because the likelihood is hard to evaluate without additional assumptions. We suggest an approach based on multivariate estimating equations that are solved using a recursive structure. This approach leads to an estimator where the large sample properties can be developed using product-integration theory. Small sample properties are investigated using simulations in a setting that mimics the motivating haplo-match problem.

Entities:  

Year:  2011        PMID: 21927531      PMCID: PMC3172162          DOI: 10.1111/j.1467-9469.2010.00720.x

Source DB:  PubMed          Journal:  Scand Stat Theory Appl        ISSN: 0303-6898            Impact factor:   1.396


  12 in total

1.  Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals.

Authors:  Dmitri V Zaykin; Peter H Westfall; S Stanley Young; Maha A Karnoub; Michael J Wagner; Margaret G Ehm
Journal:  Hum Hered       Date:  2002       Impact factor: 0.444

2.  A method for the assessment of disease associations with single-nucleotide polymorphism haplotypes and environmental variables in case-control studies.

Authors:  Lue Ping Zhao; Shuying Sue Li; Najma Khalid
Journal:  Am J Hum Genet       Date:  2003-04-16       Impact factor: 11.025

3.  Inference on haplotype effects in case-control studies using unphased genotype data.

Authors:  Michael P Epstein; Glen A Satten
Journal:  Am J Hum Genet       Date:  2003-11-20       Impact factor: 11.025

4.  Cox proportional hazards survival regression in haplotype-based association analysis using the Stochastic-EM algorithm.

Authors:  D-A Tregouet; L Tiret
Journal:  Eur J Hum Genet       Date:  2004-11       Impact factor: 4.246

Review 5.  Evaluating associations of haplotypes with traits.

Authors:  Daniel J Schaid
Journal:  Genet Epidemiol       Date:  2004-12       Impact factor: 2.135

6.  A haplotype-based test of association using data from cohort and nested case-control epidemiologic studies.

Authors:  Jinbo Chen; Ulrike Peters; Charles Foster; Nilanjan Chatterjee
Journal:  Hum Hered       Date:  2004       Impact factor: 0.444

7.  A flexible semiparametric transformation model for survival data.

Authors:  Thomas H Scheike
Journal:  Lifetime Data Anal       Date:  2006-09-20       Impact factor: 1.588

8.  Estimating haplotype effects for survival data.

Authors:  Thomas H Scheike; Torben Martinussen; Jeremy D Silver
Journal:  Biometrics       Date:  2010-09       Impact factor: 2.571

9.  A linear regression model for the analysis of life times.

Authors:  O O Aalen
Journal:  Stat Med       Date:  1989-08       Impact factor: 2.373

10.  CASE-CONTROL SURVIVAL ANALYSIS WITH A GENERAL SEMIPARAMETRIC SHARED FRAILTY MODEL - A PSEUDO FULL LIKELIHOOD APPROACH.

Authors:  Malka Gorfine; David M Zucker; Li Hsu
Journal:  Ann Stat       Date:  2009       Impact factor: 4.028

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  2 in total

1.  Competing risks with missing covariates: effect of haplotypematch on hematopoietic cell transplant patients.

Authors:  Thomas H Scheike; Martin J Maiers; Vanderson Rocha; Mei-Jie Zhang
Journal:  Lifetime Data Anal       Date:  2012-09-12       Impact factor: 1.588

2.  Comparison of Cox's Regression Model and Parametric Models in Evaluating the Prognostic Factors for Survival after Liver Transplantation in Shiraz during 2000-2012.

Authors:  R Adelian; J Jamali; N Zare; S M T Ayatollahi; G R Pooladfar; N Roustaei
Journal:  Int J Organ Transplant Med       Date:  2015
  2 in total

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