Literature DB >> 21925508

In vitro evolved non-aggregating and thermostable lipase: structural and thermodynamic investigation.

Md Zahid Kamal1, Shoeb Ahmad, Trivikram Rao Molugu, Amash Vijayalakshmi, Mandar V Deshmukh, Rajan Sankaranarayanan, Nalam Madhusudhana Rao.   

Abstract

Rational and in vitro evolutionary approaches to improve either protein stability or aggregation resistance were successful, but empirical rules for simultaneous improvement of both stability and aggregation resistance under denaturing conditions are still to be ascertained. We have created a robust variant of a lipase from Bacillus subtilis named "6B" using multiple rounds of in vitro evolution. T(m) and optimum activity temperature of 6B is 78 °C and 65 °C, respectively, which is ~22 °C and 30 °C higher than that of wild-type lipase. Most significantly, 6B does not aggregate upon heating. Physical basis of remarkable thermostability and non-aggregating behavior of 6B was explored using X-ray crystallography, NMR and differential scanning calorimetry. Our structural investigations highlight the importance of tightening of mobile regions of the molecule such as loops and helix termini to attain higher thermostability. Accordingly, NMR studies suggest a very rigid structure of 6B lipase. Further investigation suggested that reduction/perturbation of the large hydrophobic patches present in the wild-type protein structure, decreased propensity of amino acid sequence for aggregation and absence of aggregation-prone intermediate during thermal unfolding of 6B can account for its resistance to aggregation. Overall, our study suggest that better anchoring of the loops with the rest of the protein molecule through mutations particularly on the sites that perturb/disturb the exposed hydrophobic patches can simultaneously increase protein stability and aggregation resistance.
Copyright © 2011 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21925508     DOI: 10.1016/j.jmb.2011.09.002

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  31 in total

1.  Probing protein stability and proteolytic resistance by loop scanning: a comprehensive mutational analysis.

Authors:  Shoeb Ahmad; Virender Kumar; K Bhanu Ramanand; N Madhusudhana Rao
Journal:  Protein Sci       Date:  2012-02-06       Impact factor: 6.725

2.  Biophysical characterization of mutants of Bacillus subtilis lipase evolved for thermostability: factors contributing to increased activity retention.

Authors:  Wojciech Augustyniak; Agnieszka A Brzezinska; Tjaard Pijning; Hans Wienk; Rolf Boelens; Bauke W Dijkstra; Manfred T Reetz
Journal:  Protein Sci       Date:  2012-02-29       Impact factor: 6.725

3.  Comparison of Five Protein Engineering Strategies for Stabilizing an α/β-Hydrolase.

Authors:  Bryan J Jones; Huey Yee Lim; Jun Huang; Romas J Kazlauskas
Journal:  Biochemistry       Date:  2017-11-14       Impact factor: 3.162

4.  Nicotinamide phosphoribosyltransferase purification using SUMO expression system.

Authors:  Trivikram R Molugu; Radu C Oita; Udeep Chawla; Sara M Camp; Michael F Brown; Joe G N Garcia
Journal:  Anal Biochem       Date:  2020-01-23       Impact factor: 3.365

Review 5.  Advanced protein formulations.

Authors:  Wei Wang
Journal:  Protein Sci       Date:  2015-05-01       Impact factor: 6.725

6.  Effects of point mutations on the thermostability of B. subtilis lipase: investigating nonadditivity.

Authors:  Bipin Singh; Gopalakrishnan Bulusu; Abhijit Mitra
Journal:  J Comput Aided Mol Des       Date:  2016-09-30       Impact factor: 3.686

7.  High level expression and characterization of a thermostable lysophospholipase from Thermococcus kodakarensis KOD1.

Authors:  Zhicheng Cui; Yuhan Wang; Bang Phuong Pham; Fangfang Ping; Hongyu Pan; Gang-Won Cheong; Shihong Zhang; Baolei Jia
Journal:  Extremophiles       Date:  2012-05-24       Impact factor: 2.395

8.  Engineering deamidation-susceptible asparagines leads to improved stability to thermal cycling in a lipase.

Authors:  K Bhanuramanand; Shoeb Ahmad; N M Rao
Journal:  Protein Sci       Date:  2014-08-05       Impact factor: 6.725

9.  Enhanced enzyme kinetic stability by increasing rigidity within the active site.

Authors:  Yuan Xie; Jiao An; Guangyu Yang; Geng Wu; Yong Zhang; Li Cui; Yan Feng
Journal:  J Biol Chem       Date:  2014-01-21       Impact factor: 5.157

10.  Stabilization of the Reductase Domain in the Catalytically Self-Sufficient Cytochrome P450BM3 by Consensus-Guided Mutagenesis.

Authors:  Gloria Saab-Rincón; Hanan Alwaseem; Valeria Guzmán-Luna; Leticia Olvera; Rudi Fasan
Journal:  Chembiochem       Date:  2018-02-12       Impact factor: 3.164

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.