Literature DB >> 21925323

Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates.

Antoine Molaro1, Emily Hodges, Fang Fang, Qiang Song, W Richard McCombie, Gregory J Hannon, Andrew D Smith.   

Abstract

During germ cell and preimplantation development, mammalian cells undergo nearly complete reprogramming of DNA methylation patterns. We profiled the methylomes of human and chimp sperm as a basis for comparison to methylation patterns of ESCs. Although the majority of promoters escape methylation in both ESCs and sperm, the corresponding hypomethylated regions show substantial structural differences. Repeat elements are heavily methylated in both germ and somatic cells; however, retrotransposons from several subfamilies evade methylation more effectively during male germ cell development, whereas other subfamilies show the opposite trend. Comparing methylomes of human and chimp sperm revealed a subset of differentially methylated promoters and strikingly divergent methylation in retrotransposon subfamilies, with an evolutionary impact that is apparent in the underlying genomic sequence. Thus, the features that determine DNA methylation patterns differ between male germ cells and somatic cells, and elements of these features have diverged between humans and chimpanzees.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21925323      PMCID: PMC3205962          DOI: 10.1016/j.cell.2011.08.016

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  54 in total

Review 1.  Insulators: exploiting transcriptional and epigenetic mechanisms.

Authors:  Miklos Gaszner; Gary Felsenfeld
Journal:  Nat Rev Genet       Date:  2006-08-15       Impact factor: 53.242

2.  Centromeric DNA hypomethylation as an epigenetic signature discriminates between germ and somatic cell lineages.

Authors:  Kazuo Yamagata; Taiga Yamazaki; Hiromi Miki; Narumi Ogonuki; Kimiko Inoue; Atsuo Ogura; Tadashi Baba
Journal:  Dev Biol       Date:  2007-09-29       Impact factor: 3.582

3.  Cohesins functionally associate with CTCF on mammalian chromosome arms.

Authors:  Vania Parelho; Suzana Hadjur; Mikhail Spivakov; Marion Leleu; Stephan Sauer; Heather C Gregson; Adam Jarmuz; Claudia Canzonetta; Zoe Webster; Tatyana Nesterova; Bradley S Cobb; Kyoko Yokomori; Niall Dillon; Luis Aragon; Amanda G Fisher; Matthias Merkenschlager
Journal:  Cell       Date:  2008-01-31       Impact factor: 41.582

Review 4.  Epigenetic specification of centromeres.

Authors:  Yamini Dalal
Journal:  Biochem Cell Biol       Date:  2009-02       Impact factor: 3.626

Review 5.  Retrotransposons revisited: the restraint and rehabilitation of parasites.

Authors:  John L Goodier; Haig H Kazazian
Journal:  Cell       Date:  2008-10-03       Impact factor: 41.582

6.  Recently mobilized transposons in the human and chimpanzee genomes.

Authors:  Ryan E Mills; E Andrew Bennett; Rebecca C Iskow; Christopher T Luttig; Circe Tsui; W Stephen Pittard; Scott E Devine
Journal:  Am J Hum Genet       Date:  2006-02-02       Impact factor: 11.025

Review 7.  Epigenetic events in mammalian germ-cell development: reprogramming and beyond.

Authors:  Hiroyuki Sasaki; Yasuhisa Matsui
Journal:  Nat Rev Genet       Date:  2008-02       Impact factor: 53.242

8.  DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA.

Authors:  Steen K T Ooi; Chen Qiu; Emily Bernstein; Keqin Li; Da Jia; Zhe Yang; Hediye Erdjument-Bromage; Paul Tempst; Shau-Ping Lin; C David Allis; Xiaodong Cheng; Timothy H Bestor
Journal:  Nature       Date:  2007-08-09       Impact factor: 49.962

9.  KDM2A represses transcription of centromeric satellite repeats and maintains the heterochromatic state.

Authors:  David Frescas; Daniele Guardavaccaro; Shafi M Kuchay; Hiroyuki Kato; Andrey Poleshko; Venkatesha Basrur; Kojo S Elenitoba-Johnson; Richard A Katz; Michele Pagano
Journal:  Cell Cycle       Date:  2008-11-24       Impact factor: 4.534

10.  A novel CpG island set identifies tissue-specific methylation at developmental gene loci.

Authors:  Robert Illingworth; Alastair Kerr; Dina Desousa; Helle Jørgensen; Peter Ellis; Jim Stalker; David Jackson; Chris Clee; Robert Plumb; Jane Rogers; Sean Humphray; Tony Cox; Cordelia Langford; Adrian Bird
Journal:  PLoS Biol       Date:  2008-01       Impact factor: 8.029

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  175 in total

Review 1.  Active human retrotransposons: variation and disease.

Authors:  Dustin C Hancks; Haig H Kazazian
Journal:  Curr Opin Genet Dev       Date:  2012-03-08       Impact factor: 5.578

2.  Genomic landscape of human allele-specific DNA methylation.

Authors:  Fang Fang; Emily Hodges; Antoine Molaro; Matthew Dean; Gregory J Hannon; Andrew D Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-20       Impact factor: 11.205

Review 3.  The role of epigenetics in spermatogenesis.

Authors:  Sezgin Güneş; Tuba Kulaç
Journal:  Turk J Urol       Date:  2013-09

4.  Profiling DNA methylome landscapes of mammalian cells with single-cell reduced-representation bisulfite sequencing.

Authors:  Hongshan Guo; Ping Zhu; Fan Guo; Xianlong Li; Xinglong Wu; Xiaoying Fan; Lu Wen; Fuchou Tang
Journal:  Nat Protoc       Date:  2015-04-02       Impact factor: 13.491

Review 5.  The Epigenetic Consequences of Paternal Exposure to Environmental Contaminants and Reproductive Toxicants.

Authors:  Molly S Estill; Stephen A Krawetz
Journal:  Curr Environ Health Rep       Date:  2016-09

6.  Cytosine Methylation Affects the Mutability of Neighboring Nucleotides in Germline and Soma.

Authors:  Vassili Kusmartsev; Magdalena Drożdż; Benjamin Schuster-Böckler; Tobias Warnecke
Journal:  Genetics       Date:  2020-02-20       Impact factor: 4.562

Review 7.  New insights into establishment and maintenance of DNA methylation imprints in mammals.

Authors:  Gavin Kelsey; Robert Feil
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-01-05       Impact factor: 6.237

Review 8.  Epigenetics in male reproduction: effect of paternal diet on sperm quality and offspring health.

Authors:  Undraga Schagdarsurengin; Klaus Steger
Journal:  Nat Rev Urol       Date:  2016-08-31       Impact factor: 14.432

9.  Buccals are likely to be a more informative surrogate tissue than blood for epigenome-wide association studies.

Authors:  Robert Lowe; Carolina Gemma; Huriya Beyan; Mohammed I Hawa; Alexandra Bazeos; R David Leslie; Alexandre Montpetit; Vardhman K Rakyan; Sreeram V Ramagopalan
Journal:  Epigenetics       Date:  2013-03-28       Impact factor: 4.528

10.  DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus.

Authors:  Lucas T J Kaaij; Marc van de Wetering; Fang Fang; Benjamin Decato; Antoine Molaro; Harmen J G van de Werken; Johan H van Es; Jurian Schuijers; Elzo de Wit; Wouter de Laat; Gregory J Hannon; Hans C Clevers; Andrew D Smith; René F Ketting
Journal:  Genome Biol       Date:  2013-05-28       Impact factor: 13.583

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