Literature DB >> 21924975

The genetics of circadian rhythms in Neurospora.

Patricia L Lakin-Thomas1, Deborah Bell-Pedersen, Stuart Brody.   

Abstract

This chapter describes our current understanding of the genetics of the Neurospora clock and summarizes the important findings in this area in the past decade. Neurospora is the most intensively studied clock system, and the reasons for this are listed. A discussion of the genetic interactions between clock mutants is included, highlighting the utility of dissecting complex mechanisms by genetic means. The molecular details of the Neurospora circadian clock mechanism are described, as well as the mutations that affect the key clock proteins, FRQ, WC-1, and WC-2, with an emphasis on the roles of protein phosphorylation. Studies on additional genes affecting clock properties are described and place these genes into two categories: those that affect the FRQ/WCC oscillator and those that do not. A discussion of temperature compensation and the mutants affecting this property is included. A section is devoted to the observations pertinent to the existence of other oscillators in this organism with respect to their properties, their effects, and their preliminary characterization. The output of the clock and the control of clock-controlled genes are discussed, emphasizing the phasing of these genes and the layers of control. In conclusion, the authors provide an outlook summarizing their suggestions for areas that would be fruitful for further exploration.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21924975      PMCID: PMC5027897          DOI: 10.1016/B978-0-12-387690-4.00003-9

Source DB:  PubMed          Journal:  Adv Genet        ISSN: 0065-2660            Impact factor:   1.944


  148 in total

Review 1.  Neurospora at the millennium.

Authors:  D D Perkins; R H Davis
Journal:  Fungal Genet Biol       Date:  2000-12       Impact factor: 3.495

2.  vvd is required for light adaptation of conidiation-specific genes of Neurospora crassa, but not circadian conidiation.

Authors:  L B Shrode; Z A Lewis; L D White; D Bell-Pedersen; D J Ebbole
Journal:  Fungal Genet Biol       Date:  2001-04       Impact factor: 3.495

3.  Functional significance of FRH in regulating the phosphorylation and stability of Neurospora circadian clock protein FRQ.

Authors:  Jinhu Guo; Ping Cheng; Yi Liu
Journal:  J Biol Chem       Date:  2010-02-16       Impact factor: 5.157

4.  sn-1,2-diacylglycerol levels in the fungus Neurospora crassa display circadian rhythmicity.

Authors:  M Ramsdale; P L Lakin-Thomas
Journal:  J Biol Chem       Date:  2000-09-08       Impact factor: 5.157

5.  The relationship between FRQ-protein stability and temperature compensation in the Neurospora circadian clock.

Authors:  Peter Ruoff; Jennifer J Loros; Jay C Dunlap
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-28       Impact factor: 11.205

6.  VIVID is a flavoprotein and serves as a fungal blue light photoreceptor for photoadaptation.

Authors:  Carsten Schwerdtfeger; Hartmut Linden
Journal:  EMBO J       Date:  2003-09-15       Impact factor: 11.598

7.  Role of individual subunits of the Neurospora crassa CSN complex in regulation of deneddylation and stability of cullin proteins.

Authors:  Jiyong Wang; Qiwen Hu; Huijie Chen; Zhipeng Zhou; Weihua Li; Ying Wang; Shaojie Li; Qun He
Journal:  PLoS Genet       Date:  2010-12-02       Impact factor: 5.917

Review 8.  Circadian rhythms in Neurospora crassa: the role of mitochondria.

Authors:  S Brody
Journal:  Chronobiol Int       Date:  1992-06       Impact factor: 2.877

9.  Amplitude model for the effects of mutations and temperature on period and phase resetting of the Neurospora circadian oscillator.

Authors:  P L Lakin-Thomas; S Brody; G G Coté
Journal:  J Biol Rhythms       Date:  1991       Impact factor: 3.182

Review 10.  Circadian integration of metabolism and energetics.

Authors:  Joseph Bass; Joseph S Takahashi
Journal:  Science       Date:  2010-12-03       Impact factor: 47.728

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  18 in total

1.  A novel cryptochrome-dependent oscillator in Neurospora crassa.

Authors:  Imade Y Nsa; Nirmala Karunarathna; Xiaoguang Liu; Howard Huang; Brittni Boetteger; Deborah Bell-Pedersen
Journal:  Genetics       Date:  2014-10-30       Impact factor: 4.562

Review 2.  Making Time: Conservation of Biological Clocks from Fungi to Animals.

Authors:  Jay C Dunlap; Jennifer J Loros
Journal:  Microbiol Spectr       Date:  2017-05

3.  Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.

Authors:  Mani Kant Choudhary; Yuko Nomura; Lei Wang; Hirofumi Nakagami; David E Somers
Journal:  Mol Cell Proteomics       Date:  2015-06-19       Impact factor: 5.911

4.  High-resolution spatiotemporal analysis of gene expression in real time: in vivo analysis of circadian rhythms in Neurospora crassa using a FREQUENCY-luciferase translational reporter.

Authors:  Luis F Larrondo; Jennifer J Loros; Jay C Dunlap
Journal:  Fungal Genet Biol       Date:  2012-06-10       Impact factor: 3.495

5.  Circadian oscillations in Trichoderma atroviride and the role of core clock components in secondary metabolism, development, and mycoparasitism against the phytopathogen Botrytis cinerea.

Authors:  Marlene Henríquez-Urrutia; Rebecca Spanner; Consuelo Olivares-Yánez; Aldo Seguel-Avello; Rodrigo Pérez-Lara; Hector Guillén-Alonso; Robert Winkler; Alfredo Herrera-Estrella; Paulo Canessa; Luis F Larrondo
Journal:  Elife       Date:  2022-08-11       Impact factor: 8.713

6.  Circadian activation of the mitogen-activated protein kinase MAK-1 facilitates rhythms in clock-controlled genes in Neurospora crassa.

Authors:  Lindsay D Bennett; Phillip Beremand; Terry L Thomas; Deborah Bell-Pedersen
Journal:  Eukaryot Cell       Date:  2012-11-02

7.  A kinetic study of the effects of light on circadian rhythmicity of the frq promoter of Neurospora crassa.

Authors:  Van D Gooch; Alicia E Johnson; Brian J Bourne; Bradley T Nix; Jonna A Maas; Julie A Fox; Jennifer J Loros; Luis F Larrondo; Jay C Dunlap
Journal:  J Biol Rhythms       Date:  2014-02       Impact factor: 3.182

Review 8.  Natural Variation of the Circadian Clock in Neurospora.

Authors:  Bala S C Koritala; Kwangwon Lee
Journal:  Adv Genet       Date:  2017-10-12       Impact factor: 1.944

Review 9.  Mechanism of the Neurospora circadian clock, a FREQUENCY-centric view.

Authors:  Joonseok Cha; Mian Zhou; Yi Liu
Journal:  Biochemistry       Date:  2014-12-30       Impact factor: 3.162

10.  Analysis of Circadian Rhythms in the Basal Filamentous Ascomycete Pyronema confluens.

Authors:  Stefanie Traeger; Minou Nowrousian
Journal:  G3 (Bethesda)       Date:  2015-08-07       Impact factor: 3.154

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