Literature DB >> 21924169

The zon laboratory guide to positional cloning in zebrafish.

Yi Zhou1, Leonard I Zon.   

Abstract

Zebrafish genome sequencing project has improved efficiency of positional cloning in zebrafish and traditional chromosome walking by isolating large insert genomic libraries has become a past. However, the genetic principles underlying the positional cloning still form the foundation for current chromosome walking using the genome sequence assemblies and related genomic sequence and clone information. This guide intends to summarize our accumulated experience in positional cloning using the current genomic resources and tools, and provide a practical guide to positional and/or candidate cloning of mutants of interest.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21924169     DOI: 10.1016/B978-0-12-374814-0.00016-1

Source DB:  PubMed          Journal:  Methods Cell Biol        ISSN: 0091-679X            Impact factor:   1.441


  17 in total

1.  Functional expression of SCL/TAL1 interrupting locus (Stil) protects retinal dopaminergic cells from neurotoxin-induced degeneration.

Authors:  Jingling Li; Ping Li; Aprell Carr; Xiaokai Wang; April DeLaPaz; Lei Sun; Eric Lee; Erika Tomei; Lei Li
Journal:  J Biol Chem       Date:  2012-11-19       Impact factor: 5.157

2.  Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing.

Authors:  Nikolaus Obholzer; Ian A Swinburne; Evan Schwab; Alex V Nechiporuk; Teresa Nicolson; Sean G Megason
Journal:  Development       Date:  2012-10-10       Impact factor: 6.868

Review 3.  Using zebrafish to study podocyte genesis during kidney development and regeneration.

Authors:  Paul T Kroeger; Rebecca A Wingert
Journal:  Genesis       Date:  2014-06-25       Impact factor: 2.487

4.  Impairment of Cargo Transportation Caused by gbf1 Mutation Disrupts Vascular Integrity and Causes Hemorrhage in Zebrafish Embryos.

Authors:  Jing Chen; Xiaotong Wu; Likun Yao; Lu Yan; Lin Zhang; Juhui Qiu; Xingfeng Liu; Shunji Jia; Anming Meng
Journal:  J Biol Chem       Date:  2016-12-21       Impact factor: 5.157

5.  Multiple divergent haplotypes express completely distinct sets of class I MHC genes in zebrafish.

Authors:  Sean C McConnell; Anthony C Restaino; Jill L O de Jong
Journal:  Immunogenetics       Date:  2013-11-30       Impact factor: 2.846

6.  Tripartite-motif family protein 35-28 regulates microglia development by preventing necrotic death of microglial precursors in zebrafish.

Authors:  Tao Yu; Haoyue Kuang; Jiahao Chen; Xi Lin; Yi Wu; Keyu Chen; Mingjie Zhang; Wenqing Zhang; Zilong Wen
Journal:  J Biol Chem       Date:  2020-05-12       Impact factor: 5.157

Review 7.  Mutagenesis and phenotyping resources in zebrafish for studying development and human disease.

Authors:  Gaurav Kumar Varshney; Shawn Michael Burgess
Journal:  Brief Funct Genomics       Date:  2013-10-26       Impact factor: 4.241

8.  A defect in the mitochondrial protein Mpv17 underlies the transparent casper zebrafish.

Authors:  Gianluca D'Agati; Rosanna Beltre; Anna Sessa; Alexa Burger; Yi Zhou; Christian Mosimann; Richard M White
Journal:  Dev Biol       Date:  2017-07-28       Impact factor: 3.582

9.  Rapid identification of kidney cyst mutations by whole exome sequencing in zebrafish.

Authors:  Sean Ryan; Jason Willer; Lindsay Marjoram; Jennifer Bagwell; Jamie Mankiewicz; Ignaty Leshchiner; Wolfram Goessling; Michel Bagnat; Nicholas Katsanis
Journal:  Development       Date:  2013-11       Impact factor: 6.868

10.  Cardiac Na+-Ca2+ exchanger 1 (ncx1h) is critical for the ventricular cardiomyocyte formation via regulating the expression levels of gata4 and hand2 in zebrafish.

Authors:  Liming Chu; Huimin Yin; Lei Gao; Li Gao; Yu Xia; Chiyuan Zhang; Yi Chen; Tingxi Liu; Jijun Huang; Kenneth R Boheler; Yong Zhou; Huang-Tian Yang
Journal:  Sci China Life Sci       Date:  2020-07-07       Impact factor: 6.038

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