Literature DB >> 21924157

Retroviral-mediated Insertional Mutagenesis in Zebrafish.

Adam Amsterdam1, Gaurav Kumar Varshney, Shawn Michael Burgess.   

Abstract

Since the initial publication of this chapter in 2004, additional methodologies have been developed which could improve and/or complement the original retroviral-mediated insertional mutagenesis. Retroviral vectors have also been shown to be useful for goals other than mutagenesis. In addition, retroviral-mediated insertional mutagenesis has been applied to zebrafish for use in reverse genetics as well as forward screening. Finally, the insertional mutant collection described herein has been screened by a number of labs to find a host of mutants (with genes already identified) with developmental and/or growth defects affecting the eye, liver, skin, craniofacial skeleton, kidney, myeloid cells, hematopoietic stem cells, and axon pathfinding, as well as mutants with defects in the cell cycle or DNA damage response, altered aging properties, and modulated cardiac repolarization. The major complementary approaches and new uses of this technique include:
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21924157      PMCID: PMC3373308          DOI: 10.1016/B978-0-12-374814-0.00004-5

Source DB:  PubMed          Journal:  Methods Cell Biol        ISSN: 0091-679X            Impact factor:   1.441


  59 in total

1.  A large-scale insertional mutagenesis screen in zebrafish.

Authors:  A Amsterdam; S Burgess; G Golling; W Chen; Z Sun; K Townsend; S Farrington; M Haldi; N Hopkins
Journal:  Genes Dev       Date:  1999-10-15       Impact factor: 11.361

2.  Identification of a functional transposase of the Tol2 element, an Ac-like element from the Japanese medaka fish, and its transposition in the zebrafish germ lineage.

Authors:  K Kawakami; A Shima; N Kawakami
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-10       Impact factor: 11.205

Review 3.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

4.  Proviral insertions in the zebrafish hagoromo gene, encoding an F-box/WD40-repeat protein, cause stripe pattern anomalies.

Authors:  K Kawakami; A Amsterdam; N Shimoda; T Becker; J Mugg; A Shima; N Hopkins
Journal:  Curr Biol       Date:  2000-04-20       Impact factor: 10.834

5.  vhnf1, the MODY5 and familial GCKD-associated gene, regulates regional specification of the zebrafish gut, pronephros, and hindbrain.

Authors:  Z Sun; N Hopkins
Journal:  Genes Dev       Date:  2001-12-01       Impact factor: 11.361

6.  Mutation in hepatocyte nuclear factor-1 beta gene (TCF2) associated with MODY.

Authors:  Y Horikawa; N Iwasaki; M Hara; H Furuta; Y Hinokio; B N Cockburn; T Lindner; K Yamagata; M Ogata; O Tomonaga; H Kuroki; T Kasahara; Y Iwamoto; G I Bell
Journal:  Nat Genet       Date:  1997-12       Impact factor: 38.330

7.  Transposition of the nematode Caenorhabditis elegans Tc3 element in the zebrafish Danio rerio.

Authors:  E Raz; H G van Luenen; B Schaerringer; R H Plasterk; W Driever
Journal:  Curr Biol       Date:  1998-01-15       Impact factor: 10.834

8.  A genetic screen for mutations affecting embryogenesis in zebrafish.

Authors:  W Driever; L Solnica-Krezel; A F Schier; S C Neuhauss; J Malicki; D L Stemple; D Y Stainier; F Zwartkruis; S Abdelilah; Z Rangini; J Belak; C Boggs
Journal:  Development       Date:  1996-12       Impact factor: 6.868

9.  Zebrafish vasa homologue RNA is localized to the cleavage planes of 2- and 4-cell-stage embryos and is expressed in the primordial germ cells.

Authors:  C Yoon; K Kawakami; N Hopkins
Journal:  Development       Date:  1997-08       Impact factor: 6.868

10.  The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio.

Authors:  P Haffter; M Granato; M Brand; M C Mullins; M Hammerschmidt; D A Kane; J Odenthal; F J van Eeden; Y J Jiang; C P Heisenberg; R N Kelsh; M Furutani-Seiki; E Vogelsang; D Beuchle; U Schach; C Fabian; C Nüsslein-Volhard
Journal:  Development       Date:  1996-12       Impact factor: 6.868

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  13 in total

Review 1.  Zebrafish models of human liver development and disease.

Authors:  Benjamin J Wilkins; Michael Pack
Journal:  Compr Physiol       Date:  2013-07       Impact factor: 9.090

Review 2.  Clinical and Molecular Delineation of Cutis Laxa Syndromes: Paradigms for Homeostasis.

Authors:  Aude Beyens; Lore Pottie; Patrick Sips; Bert Callewaert
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

3.  Danio rerio: Small Fish Making a Big Splash in Leukemia.

Authors:  Barbara Squiban; J Kimble Frazer
Journal:  Curr Pathobiol Rep       Date:  2014-06

Review 4.  Mutagenesis and phenotyping resources in zebrafish for studying development and human disease.

Authors:  Gaurav Kumar Varshney; Shawn Michael Burgess
Journal:  Brief Funct Genomics       Date:  2013-10-26       Impact factor: 4.241

Review 5.  How Zebrafish Can Drive the Future of Genetic-based Hearing and Balance Research.

Authors:  Lavinia Sheets; Melanie Holmgren; Katie S Kindt
Journal:  J Assoc Res Otolaryngol       Date:  2021-04-28

6.  The zebrafish mutants for the V-ATPase subunits d, ac45, E, H and c and their variable pigment dilution phenotype.

Authors:  Jose L Ramos-Balderas; Samantha Carrillo-Rosas; Aida Guzman; Rosa E Navarro; Ernesto Maldonado
Journal:  BMC Res Notes       Date:  2013-02-02

7.  Gene transfer and genome-wide insertional mutagenesis by retroviral transduction in fish stem cells.

Authors:  Qizhi Liu; Yunzhi Wang; Fan Lin; Lei Zhang; Yan Li; Ruowen Ge; Yunhan Hong
Journal:  PLoS One       Date:  2015-06-01       Impact factor: 3.240

8.  Comparative oncogenomic analysis of copy number alterations in human and zebrafish tumors enables cancer driver discovery.

Authors:  GuangJun Zhang; Sebastian Hoersch; Adam Amsterdam; Charles A Whittaker; Eline Beert; Julian M Catchen; Sarah Farrington; John H Postlethwait; Eric Legius; Nancy Hopkins; Jacqueline A Lees
Journal:  PLoS Genet       Date:  2013-08-29       Impact factor: 5.917

9.  Effective gene trapping mediated by Sleeping Beauty transposon.

Authors:  Guili Song; Qing Li; Yong Long; Qilin Gu; Perry B Hackett; Zongbin Cui
Journal:  PLoS One       Date:  2012-08-31       Impact factor: 3.240

10.  A viral over-expression system for the major malaria mosquito Anopheles gambiae.

Authors:  Yasutsugu Suzuki; Guodong Niu; Grant L Hughes; Jason L Rasgon
Journal:  Sci Rep       Date:  2014-05-30       Impact factor: 4.379

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