Literature DB >> 21922653

Chemistry and structural biology of DNA damage and biological consequences.

Michael P Stone1, Hai Huang, Kyle L Brown, Ganesh Shanmugam.   

Abstract

The formation of adducts by the reaction of chemicals with DNA is a critical step for the <span class="Disease">initiation of carcinogenesis. The structural analysis of various DNA adducts reveals that conformational and chemical rearrangements and interconversions are a common theme. Conformational changes are modulated both by the nature of adduct and the base sequences neighboring the lesion sites. Equilibria between conformational states may modulate both DNA repair and error-prone replication past these adducts. Likewise, chemical rearrangements of initially formed DNA adducts are also modulated both by the nature of adducts and the base sequences neighboring the lesion sites. In this review, we focus on DNA damage caused by a number of environmental and endogenous agents, and biological consequences. 2011 Verlag Helvetica Chimica Acta AG, Zürich.

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Year:  2011        PMID: 21922653      PMCID: PMC3714022          DOI: 10.1002/cbdv.201100033

Source DB:  PubMed          Journal:  Chem Biodivers        ISSN: 1612-1872            Impact factor:   2.408


  368 in total

1.  Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poleta.

Authors:  F Boudsocq; S Iwai; F Hanaoka; R Woodgate
Journal:  Nucleic Acids Res       Date:  2001-11-15       Impact factor: 16.971

2.  The pH-dependent role of superoxide in riboflavin-catalyzed photooxidation of 8-oxo-7,8-dihydroguanosine.

Authors:  W Luo; J G Muller; C J Burrows
Journal:  Org Lett       Date:  2001-09-06       Impact factor: 6.005

3.  Interchain cross-linking of DNA mediated by the principal adduct of acrolein.

Authors:  I D Kozekov; L V Nechev; A Sanchez; C M Harris; R S Lloyd; T M Harris
Journal:  Chem Res Toxicol       Date:  2001-11       Impact factor: 3.739

4.  Structure of an oligodeoxynucleotide containing a 1,N(2)-propanodeoxyguanosine adduct positioned in a palindrome derived from the Salmonella typhimurium hisD3052 gene: Hoogsteen pairing at pH 5.2.

Authors:  Jason P Weisenseel; G Ramachandra Reddy; Lawrence J Marnett; Michael P Stone
Journal:  Chem Res Toxicol       Date:  2002-02       Impact factor: 3.739

5.  The exocyclic 1,N2-deoxyguanosine pyrimidopurinone M1G is a chemically stable DNA adduct when placed opposite a two-base deletion in the (CpG)3 frameshift hotspot of the Salmonella typhimurium hisD3052 gene.

Authors:  N C Schnetz-Boutaud; S Saleh; L J Marnett; M P Stone
Journal:  Biochemistry       Date:  2001-12-25       Impact factor: 3.162

6.  Equine estrogen metabolite 4-hydroxyequilenin induces DNA damage in the rat mammary tissues: formation of single-strand breaks, apurinic sites, stable adducts, and oxidized bases.

Authors:  F Zhang; S M Swanson; R B van Breemen; X Liu; Y Yang; C Gu; J L Bolton
Journal:  Chem Res Toxicol       Date:  2001-12       Impact factor: 3.739

7.  Detection of 1,N2-propanodeoxyguanosine adducts of trans-4-hydroxy-2-nonenal after gavage of trans-4-hydroxy-2-nonenal or induction of lipid peroxidation with carbon tetrachloride in F344 rats.

Authors:  M Wacker; P Wanek; E Eder
Journal:  Chem Biol Interact       Date:  2001-09-28       Impact factor: 5.192

8.  The nonmutagenic (R)- and (S)-beta-(N(6)-adenyl)styrene oxide adducts are oriented in the major groove and show little perturbation to DNA structure.

Authors:  C Hennard; J Finneman; C M Harris; T M Harris; M P Stone
Journal:  Biochemistry       Date:  2001-08-21       Impact factor: 3.162

9.  Point mutations induced by 1,2-epoxy-3-butene N1 deoxyinosine adducts.

Authors:  D A Rodriguez; A Kowalczyk; J B Ward; C M Harris; T M Harris; R S Lloyd
Journal:  Environ Mol Mutagen       Date:  2001       Impact factor: 3.216

10.  Structure of the malondialdehyde deoxyguanosine adduct M1G when placed opposite a two-base deletion in the (CpG)3 frameshift hotspot of the Salmonella typhimurium hisD3052 gene.

Authors:  N C Schnetz-Boutaud; S Saleh; L J Marnett; M P Stone
Journal:  Adv Exp Med Biol       Date:  2001       Impact factor: 2.622

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  13 in total

1.  NEIL1 responds and binds to psoralen-induced DNA interstrand crosslinks.

Authors:  Daniel R McNeill; Manikandan Paramasivam; Jakita Baldwin; Jing Huang; Vaddadi N Vyjayanti; Michael M Seidman; David M Wilson
Journal:  J Biol Chem       Date:  2013-03-18       Impact factor: 5.157

2.  Nucleotide excision repair efficiencies of bulky carcinogen-DNA adducts are governed by a balance between stabilizing and destabilizing interactions.

Authors:  Yuqin Cai; Nicholas E Geacintov; Suse Broyde
Journal:  Biochemistry       Date:  2012-02-09       Impact factor: 3.162

3.  Insights into the conformation of aminofluorene-deoxyguanine adduct in a DNA polymerase active site.

Authors:  Vaidyanathan G Vaidyanathan; Fengting Liang; William A Beard; David D Shock; Samuel H Wilson; Bongsup P Cho
Journal:  J Biol Chem       Date:  2013-06-24       Impact factor: 5.157

4.  Nuclear magnetic resonance solution structure of an N(2)-guanine DNA adduct derived from the potent tumorigen dibenzo[a,l]pyrene: intercalation from the minor groove with ruptured Watson-Crick base pairing.

Authors:  Yijin Tang; Zhi Liu; Shuang Ding; Chin H Lin; Yuqin Cai; Fabian A Rodriguez; Jane M Sayer; Donald M Jerina; Shantu Amin; Suse Broyde; Nicholas E Geacintov
Journal:  Biochemistry       Date:  2012-11-15       Impact factor: 3.162

5.  Direct infusion analysis of nucleotide mixtures of very similar or identical elemental composition.

Authors:  Ryan Quinn; Maria Basanta-Sanchez; Rebecca E Rose; Daniele Fabris
Journal:  J Mass Spectrom       Date:  2013-06       Impact factor: 1.982

6.  Free energy profiles of base flipping in intercalative polycyclic aromatic hydrocarbon-damaged DNA duplexes: energetic and structural relationships to nucleotide excision repair susceptibility.

Authors:  Yuqin Cai; Han Zheng; Shuang Ding; Konstantin Kropachev; Adam G Schwaid; Yijin Tang; Hong Mu; Shenglong Wang; Nicholas E Geacintov; Yingkai Zhang; Suse Broyde
Journal:  Chem Res Toxicol       Date:  2013-07-02       Impact factor: 3.739

7.  Preferred WMSA catalytic mechanism of the nucleotidyl transfer reaction in human DNA polymerase κ elucidates error-free bypass of a bulky DNA lesion.

Authors:  Lee Lior-Hoffmann; Lihua Wang; Shenglong Wang; Nicholas E Geacintov; Suse Broyde; Yingkai Zhang
Journal:  Nucleic Acids Res       Date:  2012-07-05       Impact factor: 16.971

8.  Nucleotide excision repair of 2-acetylaminofluorene- and 2-aminofluorene-(C8)-guanine adducts: molecular dynamics simulations elucidate how lesion structure and base sequence context impact repair efficiencies.

Authors:  Hong Mu; Konstantin Kropachev; Lihua Wang; Lu Zhang; Alexander Kolbanovskiy; Marina Kolbanovskiy; Nicholas E Geacintov; Suse Broyde
Journal:  Nucleic Acids Res       Date:  2012-08-16       Impact factor: 16.971

9.  Oxidative damage and mutagenesis in Saccharomyces cerevisiae: genetic studies of pathways affecting replication fidelity of 8-oxoguanine.

Authors:  Arthur H Shockley; David W Doo; Gina P Rodriguez; Gray F Crouse
Journal:  Genetics       Date:  2013-07-26       Impact factor: 4.562

10.  4-vinyl-substituted pyrimidine nucleosides exhibit the efficient and selective formation of interstrand cross-links with RNA and duplex DNA.

Authors:  Atsushi Nishimoto; Daichi Jitsuzaki; Kazumitsu Onizuka; Yosuke Taniguchi; Fumi Nagatsugi; Shigeki Sasaki
Journal:  Nucleic Acids Res       Date:  2013-06-18       Impact factor: 16.971

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