Literature DB >> 21921300

A new ImageJ plug-in "ActogramJ" for chronobiological analyses.

Benjamin Schmid, Charlotte Helfrich-Förster, Taishi Yoshii.   

Abstract

While the rapid development of personal computers and high-throughput recording systems for circadian rhythms allow chronobiologists to produce huge amounts of data, the software to analyze them often lags behind. Here, we announce newly developed chronobiology software that is easy to use, compatible with many different systems, and freely available. Our system can perform the most frequently used analyses: actogram drawing, periodogram analysis, and waveform analysis. The software is distributed as a pure Java plug-in for ImageJ and so works on the 3 main operating systems: Linux, Macintosh, and Windows. We believe that this free software raises the speed of data analyses and makes studying chronobiology accessible to newcomers.
© 2011 The Author(s)

Mesh:

Year:  2011        PMID: 21921300     DOI: 10.1177/0748730411414264

Source DB:  PubMed          Journal:  J Biol Rhythms        ISSN: 0748-7304            Impact factor:   3.182


  93 in total

1.  Ant circadian activity associated with brood care type.

Authors:  Haruna Fujioka; Masato S Abe; Taro Fuchikawa; Kazuki Tsuji; Masakazu Shimada; Yasukazu Okada
Journal:  Biol Lett       Date:  2017-02       Impact factor: 3.703

2.  Thermoregulation and energetics in hibernating black bears: metabolic rate and the mystery of multi-day body temperature cycles.

Authors:  Øivind Tøien; John Blake; Brian M Barnes
Journal:  J Comp Physiol B       Date:  2015-02-04       Impact factor: 2.200

3.  The influence of pro-longevity gene Gclc overexpression on the age-dependent changes in Drosophila transcriptome and biological functions.

Authors:  Alexey Moskalev; Mikhail Shaposhnikov; Ekaterina Proshkina; Alexey Belyi; Alexander Fedintsev; Svetlana Zhikrivetskaya; Zulfiya Guvatova; Asiya Sadritdinova; Anastasia Snezhkina; George Krasnov; Anna Kudryavtseva
Journal:  BMC Genomics       Date:  2016-12-28       Impact factor: 3.969

4.  Octodon degus, a new model to study the agonist and plexus-induced response in the urinary bladder.

Authors:  Francisco Eduardo Martin-Cano; Mercedes Caso-Agundez; Cristina Camello-Almaraz; Francisco Juan Santos; María Teresa Espin; Juan Antonio Madrid; Adolfo Diez-Perez; Pedro Javier Camello; Maria Jose Pozo
Journal:  J Physiol Biochem       Date:  2016-10-13       Impact factor: 4.158

5.  T-box transcription regulator Tbr2 is essential for the formation and maintenance of Opn4/melanopsin-expressing intrinsically photosensitive retinal ganglion cells.

Authors:  Chai-An Mao; Hongyan Li; Zhijing Zhang; Takae Kiyama; Satchidananda Panda; Samer Hattar; Christophe P Ribelayga; Stephen L Mills; Steven W Wang
Journal:  J Neurosci       Date:  2014-09-24       Impact factor: 6.167

6.  A Neural Network Underlying Circadian Entrainment and Photoperiodic Adjustment of Sleep and Activity in Drosophila.

Authors:  Matthias Schlichting; Pamela Menegazzi; Katharine R Lelito; Zepeng Yao; Edgar Buhl; Elena Dalla Benetta; Andrew Bahle; Jennifer Denike; James John Hodge; Charlotte Helfrich-Förster; Orie Thomas Shafer
Journal:  J Neurosci       Date:  2016-08-31       Impact factor: 6.167

7.  A Distinct Visual Pathway Mediates High-Intensity Light Adaptation of the Circadian Clock in Drosophila.

Authors:  Matthias Schlichting; Pamela Menegazzi; Michael Rosbash; Charlotte Helfrich-Förster
Journal:  J Neurosci       Date:  2019-01-03       Impact factor: 6.167

8.  Measuring individual locomotor rhythms in honey bees, paper wasps and other similar-sized insects.

Authors:  Manuel A Giannoni-Guzmán; Arian Avalos; Jaime Marrero Perez; Eduardo J Otero Loperena; Mehmet Kayım; Jose Alejandro Medina; Steve E Massey; Meral Kence; Aykut Kence; Tugrul Giray; José L Agosto-Rivera
Journal:  J Exp Biol       Date:  2014-01-16       Impact factor: 3.312

9.  Long-term imaging of circadian locomotor rhythms of a freely crawling C. elegans population.

Authors:  Ari Winbush; Matthew Gruner; Grant W Hennig; Alexander M van der Linden
Journal:  J Neurosci Methods       Date:  2015-04-22       Impact factor: 2.390

10.  Quasimodo mediates daily and acute light effects on Drosophila clock neuron excitability.

Authors:  Edgar Buhl; Adam Bradlaugh; Maite Ogueta; Ko-Fan Chen; Ralf Stanewsky; James J L Hodge
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-07       Impact factor: 11.205

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