Literature DB >> 21919029

Integrative genomic, transcriptomic, and RNAi analysis indicates a potential oncogenic role for FAM110B in castration-resistant prostate cancer.

Paula Vainio1, Maija Wolf, Henrik Edgren, Tao He, Pekka Kohonen, John-Patrick Mpindi, Frank Smit, Gerald Verhaegh, Jack Schalken, Merja Perälä, Kristiina Iljin, Olli Kallioniemi.   

Abstract

BACKGROUND: Castration-resistant prostate cancer (CRPC) represents a therapeutic challenge for current medications.
METHODS: In order to explore the molecular mechanisms involved in CRPC progression and to identify new therapeutic targets, we analyzed a unique sample set of 11 CRPCs and 7 advanced tumors by array-CGH and gene expression microarrays. The genome-wide DNA and RNA data were integrated to identify genes whose overexpression was driven by their amplification. To assess the functional role of these genes, their expression was analyzed in a transcriptional data set of 329 clinical prostate cancers and the corresponding gene products were silenced using RNA interference in prostate cancer cells.
RESULTS: Six recurrent genetic targets were identified in the CRPCs; ATP1B1, AR, FAM110B, LAS1L, MYC, and YIPF6. In addition to AR and MYC, FAM110B emerged as a potential key gene involved in CRPC progression in a subset of the tumors. FAM110B was able to regulate AR signaling in prostate cancer cells and FAM110B itself was regulated by androgens. FAM110B siRNA inhibited the growth of prostate cancer cells in vitro, and this effect was substantially enhanced in androgen deficient conditions. Ectopic FAM110B expression in non-cancerous epithelial prostate cells induced aneuploidy and impaired antigen presentation.
CONCLUSIONS: The DNA/RNA gene outlier detection combined with siRNA cell proliferation assay identified FAM110B as a potential growth promoting key gene for CRPC. FAM110B appears to have a key role in the androgen signaling and progression of CRPC impacting multiple cancer hallmarks and therefore highlighting a potential therapeutic target.
Copyright © 2011 Wiley Periodicals, Inc.

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Year:  2011        PMID: 21919029     DOI: 10.1002/pros.21487

Source DB:  PubMed          Journal:  Prostate        ISSN: 0270-4137            Impact factor:   4.104


  14 in total

1.  Epigenome-Wide Tumor DNA Methylation Profiling Identifies Novel Prognostic Biomarkers of Metastatic-Lethal Progression in Men Diagnosed with Clinically Localized Prostate Cancer.

Authors:  Shanshan Zhao; Milan S Geybels; Amy Leonardson; Rohina Rubicz; Suzanne Kolb; Qingxiang Yan; Brandy Klotzle; Marina Bibikova; Antonio Hurtado-Coll; Dean Troyer; Raymond Lance; Daniel W Lin; Jonathan L Wright; Elaine A Ostrander; Jian-Bing Fan; Ziding Feng; Janet L Stanford
Journal:  Clin Cancer Res       Date:  2016-06-29       Impact factor: 12.531

2.  A meta-analysis of multiple matched copy number and transcriptomics data sets for inferring gene regulatory relationships.

Authors:  Richard Newton; Lorenz Wernisch
Journal:  PLoS One       Date:  2014-08-22       Impact factor: 3.240

3.  Cribriform and intraductal prostate cancer are associated with increased genomic instability and distinct genomic alterations.

Authors:  René Böttcher; Charlotte F Kweldam; Julie Livingstone; Emilie Lalonde; Takafumi N Yamaguchi; Vincent Huang; Fouad Yousif; Michael Fraser; Robert G Bristow; Theodorus van der Kwast; Paul C Boutros; Guido Jenster; Geert J L H van Leenders
Journal:  BMC Cancer       Date:  2018-01-02       Impact factor: 4.430

4.  Aggressive rat prostate tumors reprogram the benign parts of the prostate and regional lymph nodes prior to metastasis.

Authors:  Kerstin Strömvall; Elin Thysell; Sofia Halin Bergström; Anders Bergh
Journal:  PLoS One       Date:  2017-05-04       Impact factor: 3.240

5.  Exploring the role of sphingolipid machinery during the epithelial to mesenchymal transition program using an integrative approach.

Authors:  Anastasia Meshcheryakova; Martin Svoboda; Ammar Tahir; Harald C Köfeler; Alexander Triebl; Felicitas Mungenast; Georg Heinze; Christopher Gerner; Philip Zimmermann; Markus Jaritz; Diana Mechtcheriakova
Journal:  Oncotarget       Date:  2016-04-19

6.  DNA methylation among firefighters.

Authors:  Jin Zhou; Timothy G Jenkins; Alesia M Jung; Kyoung Sook Jeong; Jing Zhai; Elizabeth T Jacobs; Stephanie C Griffin; Devi Dearmon-Moore; Sally R Littau; Wayne F Peate; Nathan A Ellis; Peter Lance; Yin Chen; Jefferey L Burgess
Journal:  PLoS One       Date:  2019-03-26       Impact factor: 3.240

7.  Investigating inter-chromosomal regulatory relationships through a comprehensive meta-analysis of matched copy number and transcriptomics data sets.

Authors:  Richard Newton; Lorenz Wernisch
Journal:  BMC Genomics       Date:  2015-11-18       Impact factor: 3.969

8.  Transcriptomic features of primary prostate cancer and their prognostic relevance to castration-resistant prostate cancer.

Authors:  Seok Joong Yun; Seon-Kyu Kim; Jayoung Kim; Eun-Jong Cha; Jang-Seong Kim; Sun-Jin Kim; Yun-Sok Ha; Ye-Hwan Kim; Pildu Jeong; Ho Won Kang; Jeong-Hwan Kim; Jong-Lyul Park; Young-Ki Choi; Sung-Kwon Moon; Yung-Hyun Choi; Seon-Young Kim; Wun-Jae Kim
Journal:  Oncotarget       Date:  2017-11-06

9.  FAM110B Inhibits Non-Small Cell Lung Cancer Cell Proliferation and Invasion Through Inactivating Wnt/β-Catenin Signaling.

Authors:  Menghua Xie; Lin Cai; Jingduo Li; Jing Zhao; Yingxue Guo; Zaiyu Hou; Xiupeng Zhang; Hua Tian; Ailin Li; Yuan Miao
Journal:  Onco Targets Ther       Date:  2020-05-19       Impact factor: 4.147

10.  A hnRNP K⁻AR-Related Signature Reflects Progression toward Castration-Resistant Prostate Cancer.

Authors:  Matteo Capaia; Ilaria Granata; Mario Guarracino; Andrea Petretto; Elvira Inglese; Carlo Cattrini; Nicoletta Ferrari; Francesco Boccardo; Paola Barboro
Journal:  Int J Mol Sci       Date:  2018-06-30       Impact factor: 5.923

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