Literature DB >> 21918653

Polymorphism of amyloid β peptide in different environments: implications for membrane insertion and pore formation.

Fernando Terán Arce1, Hyunbum Jang, Srinivasan Ramachandran, Preston B Landon, Ruth Nussinov, Ratnesh Lal.   

Abstract

Amyloid-β (Aβ) peptides are thought to be involved in neurodegenerative diseases such as Alzheimer's disease and Down's syndrome. They form a large number of polymorphic structures, including heterogeneous ionic pores in membranes as well as different types of fibrillar and globular structures on surfaces and in solution. Understanding the origin of these structures and the factors that influence their occurrence is of great biomedical interest because of the possible relationship between structure and pathogenicity. Here, we use atomic force microscopy (AFM) and molecular dynamics (MD) simulations to demonstrate that at room temperature a truncated Aβ peptide which is generated in vivo and shown to be toxic in vitro forms fibrillar structures on hydrophobic graphite surfaces, but not on hydrophilic mica or lipid bilayers. Our results suggest that the toxic pores and fibrillar polymorphic organizations can be explained in terms of the U-shaped β-strand-turn-β-strand structural motif observed for full length Aβ and other amyloids, as well as the physicochemical properties at the interfaces. The interactions of the hydrophobic, truncated Aβ with its environment illustrate that the universal amyloid motif can provide a link between the pore and fibrillar structures and indicate that surfaces with different physicochemical properties can shift the polymorphic landscape toward other conformational states.

Entities:  

Year:  2011        PMID: 21918653      PMCID: PMC3170770          DOI: 10.1039/C1SM05162H

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   3.679


  43 in total

1.  Amyloid-beta peptide assembly: a critical step in fibrillogenesis and membrane disruption.

Authors:  C M Yip; J McLaurin
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

Review 2.  Protein folding and misfolding.

Authors:  Christopher M Dobson
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

3.  Zinc ions promote Alzheimer Abeta aggregation via population shift of polymorphic states.

Authors:  Yifat Miller; Buyong Ma; Ruth Nussinov
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-06       Impact factor: 11.205

Review 4.  Amyloidogenic protein-membrane interactions: mechanistic insight from model systems.

Authors:  Sara M Butterfield; Hilal A Lashuel
Journal:  Angew Chem Int Ed Engl       Date:  2010-08-02       Impact factor: 15.336

Review 5.  Alzheimer's disease.

Authors:  Henry W Querfurth; Frank M LaFerla
Journal:  N Engl J Med       Date:  2010-01-28       Impact factor: 91.245

6.  Amyloid beta protein forms ion channels: implications for Alzheimer's disease pathophysiology.

Authors:  H Lin; R Bhatia; R Lal
Journal:  FASEB J       Date:  2001-11       Impact factor: 5.191

7.  Structural convergence among diverse, toxic beta-sheet ion channels.

Authors:  Hyunbum Jang; Fernando Teran Arce; Srinivasan Ramachandran; Ricardo Capone; Ratnesh Lal; Ruth Nussinov
Journal:  J Phys Chem B       Date:  2010-07-29       Impact factor: 2.991

Review 8.  Amyloid precursor protein trafficking, processing, and function.

Authors:  Gopal Thinakaran; Edward H Koo
Journal:  J Biol Chem       Date:  2008-07-23       Impact factor: 5.157

9.  Stabilities and conformations of Alzheimer's beta -amyloid peptide oligomers (Abeta 16-22, Abeta 16-35, and Abeta 10-35): Sequence effects.

Authors:  Buyong Ma; Ruth Nussinov
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-21       Impact factor: 11.205

10.  General structural motifs of amyloid protofilaments.

Authors:  Neil Ferguson; Johanna Becker; Henning Tidow; Sandra Tremmel; Timothy D Sharpe; Gerd Krause; Jeremy Flinders; Miriana Petrovich; John Berriman; Hartmut Oschkinat; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

View more
  21 in total

1.  Reduced Lipid Bilayer Thickness Regulates the Aggregation and Cytotoxicity of Amyloid-β.

Authors:  Kyle J Korshavn; Cristina Satriano; Yuxi Lin; Rongchun Zhang; Mark Dulchavsky; Anirban Bhunia; Magdalena I Ivanova; Young-Ho Lee; Carmelo La Rosa; Mi Hee Lim; Ayyalusamy Ramamoorthy
Journal:  J Biol Chem       Date:  2017-02-01       Impact factor: 5.157

2.  Molecular dynamics simulation studies of the structural response of an isolated Aβ1-42 monomer localized in the vicinity of the hydrophilic TiO 2 surface.

Authors:  Jaya C Jose; Neelanjana Sengupta
Journal:  Eur Biophys J       Date:  2013-04-12       Impact factor: 1.733

Review 3.  Disordered amyloidogenic peptides may insert into the membrane and assemble into common cyclic structural motifs.

Authors:  Hyunbum Jang; Fernando Teran Arce; Srinivasan Ramachandran; Bruce L Kagan; Ratnesh Lal; Ruth Nussinov
Journal:  Chem Soc Rev       Date:  2014-10-07       Impact factor: 54.564

4.  Atomic force microscopy and MD simulations reveal pore-like structures of all-D-enantiomer of Alzheimer's β-amyloid peptide: relevance to the ion channel mechanism of AD pathology.

Authors:  Laura Connelly; Hyunbum Jang; Fernando Teran Arce; Ricardo Capone; Samuel A Kotler; Srinivasan Ramachandran; Bruce L Kagan; Ruth Nussinov; Ratnesh Lal
Journal:  J Phys Chem B       Date:  2012-01-25       Impact factor: 2.991

5.  Amyloid β Ion Channels in a Membrane Comprising Brain Total Lipid Extracts.

Authors:  Joon Lee; Young Hun Kim; Fernando T Arce; Alan L Gillman; Hyunbum Jang; Bruce L Kagan; Ruth Nussinov; Jerry Yang; Ratnesh Lal
Journal:  ACS Chem Neurosci       Date:  2017-02-20       Impact factor: 4.418

6.  Effects of point substitutions on the structure of toxic Alzheimer's β-amyloid channels: atomic force microscopy and molecular dynamics simulations.

Authors:  Laura Connelly; Hyunbum Jang; Fernando Teran Arce; Srinivasan Ramachandran; Bruce L Kagan; Ruth Nussinov; Ratnesh Lal
Journal:  Biochemistry       Date:  2012-03-28       Impact factor: 3.162

7.  Molecular interactions of Alzheimer amyloid-β oligomers with neutral and negatively charged lipid bilayers.

Authors:  Xiang Yu; Qiuming Wang; Qingfen Pan; Feimeng Zhou; Jie Zheng
Journal:  Phys Chem Chem Phys       Date:  2013-03-14       Impact factor: 3.676

8.  Mechanisms for the Insertion of Toxic, Fibril-like β-Amyloid Oligomers into the Membrane.

Authors:  Hyunbum Jang; Laura Connelly; Fernando Teran Arce; Srinivasan Ramachandran; Bruce L Kagan; Ratnesh Lal; Ruth Nussinov
Journal:  J Chem Theory Comput       Date:  2012-12-05       Impact factor: 6.006

9.  Small molecule NPT-440-1 inhibits ionic flux through Aβ1-42 pores: Implications for Alzheimer's disease therapeutics.

Authors:  Alan L Gillman; Joon Lee; Srinivasan Ramachandran; Ricardo Capone; Tania Gonzalez; Wolf Wrasidlo; Eliezer Masliah; Ratnesh Lal
Journal:  Nanomedicine       Date:  2016-06-19       Impact factor: 5.307

10.  Membrane permeation induced by aggregates of human islet amyloid polypeptides.

Authors:  Chetan Poojari; Dequan Xiao; Victor S Batista; Birgit Strodel
Journal:  Biophys J       Date:  2013-11-19       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.