Literature DB >> 2191698

Chemical and photochemical probing of DNA complexes.

P E Nielsen1.   

Abstract

An overview of the chemical and photochemical probes which over the past ten years have been used in studies of DNA/ligand complexes and of non-B-form DNA conformations is presented with emphasis on the chemical reactions of the probes with DNA and on their present 'use-profile'. The chemical probes include: dimethyl sulfate, ethyl nitroso urea, diethyl pyrocarbonate, osmium tetroxide, permanganate, aldehydes, methidiumpropyl-EDTA-Fell (MPE), phenanthroline metal complexes and EDTA/FeII. The photochemical probes that have been used include: psoralens, UVB, acridines and uranyl salts. The biological systems analysed by use of these probes are reviewed by tabulation.

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Year:  1990        PMID: 2191698     DOI: 10.1002/jmr.300030102

Source DB:  PubMed          Journal:  J Mol Recognit        ISSN: 0952-3499            Impact factor:   2.137


  23 in total

1.  Target DNA structure plays a critical role in Tn7 transposition.

Authors:  P N Kuduvalli; J E Rao; N L Craig
Journal:  EMBO J       Date:  2001-02-15       Impact factor: 11.598

Review 2.  DNA-protein interactions: methods for detection and analysis.

Authors:  Bipasha Dey; Sameer Thukral; Shruti Krishnan; Mainak Chakrobarty; Sahil Gupta; Chanchal Manghani; Vibha Rani
Journal:  Mol Cell Biochem       Date:  2012-03-08       Impact factor: 3.396

3.  Conformation of DNA GG intrastrand cross-link of antitumor oxaliplatin and its enantiomeric analog.

Authors:  Jaroslav Malina; Olga Novakova; Marie Vojtiskova; Giovanni Natile; Viktor Brabec
Journal:  Biophys J       Date:  2007-08-17       Impact factor: 4.033

4.  Detection of DNA structural motifs in functional genomic elements.

Authors:  Jason A Greenbaum; Stephen C J Parker; Thomas D Tullius
Journal:  Genome Res       Date:  2007-06       Impact factor: 9.043

5.  An in vitro transcription assay for probing drug-DNA interactions at individual drug sites.

Authors:  D R Phillips; C M Cullinane; D M Crothers
Journal:  Mol Biotechnol       Date:  1998-08       Impact factor: 2.695

6.  Multiple single-stranded cis elements are associated with activated chromatin of the human c-myc gene in vivo.

Authors:  G A Michelotti; E F Michelotti; A Pullner; R C Duncan; D Eick; D Levens
Journal:  Mol Cell Biol       Date:  1996-06       Impact factor: 4.272

7.  Thermodynamic stability and energetics of DNA duplexes containing major intrastrand cross-links of second-generation antitumor dinuclear Pt(II) complexes.

Authors:  Jakub Florian; Jana Kasparkova; Nicholas P Farrell; Viktor Brabec
Journal:  J Biol Inorg Chem       Date:  2011-09-06       Impact factor: 3.358

8.  Localized chemical reactivity in DNA associated with the sequence-specific bisintercalation of echinomycin.

Authors:  C Bailly; D Gentle; F Hamy; M Purcell; M J Waring
Journal:  Biochem J       Date:  1994-05-15       Impact factor: 3.857

9.  DNA adduct-induced stabilization of slipped frameshift intermediates within repetitive sequences: implications for mutagenesis.

Authors:  A Garcia; I B Lambert; R P Fuchs
Journal:  Proc Natl Acad Sci U S A       Date:  1993-07-01       Impact factor: 11.205

10.  Biophysical studies on the stability of DNA intrastrand cross-links of transplatin.

Authors:  Jana Kasparkova; Victoria Marini; Vendula Bursova; Viktor Brabec
Journal:  Biophys J       Date:  2008-08-01       Impact factor: 4.033

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