Literature DB >> 21915779

The RNA infrastructure: an introduction to ncRNA networks.

Lesley J Collins1.   

Abstract

The RNA infrastructure connects RNA-based functions. With transcription-to-translation processing forming the core of the network, we can visualise how RNA-based regulation, cleavage and modification are the backbone of cellular function. The key to interpreting the RNA-infrastructure is in understanding how core RNAs (tRNA, mRNA and rRNA) and other ncRNAs operate in a spatial-temporal manner, moving around the nucleus, cytoplasm and organelles during processing, or in response to environmental cues. This chapter summarises the concept of the RNA-infrastructure, and highlights examples of RNA-based networking within prokaryotes and eukaryotes. It describes how transcription-to-translation processes are tightly connected, and explores some similarities and differences between prokaryotic and eukaryotic RNA networking.

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Year:  2011        PMID: 21915779     DOI: 10.1007/978-1-4614-0332-6_1

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  12 in total

1.  Long Non-Coding RNAs (lncRNAs) of Sea Cucumber: Large-Scale Prediction, Expression Profiling, Non-Coding Network Construction, and lncRNA-microRNA-Gene Interaction Analysis of lncRNAs in Apostichopus japonicus and Holothuria glaberrima During LPS Challenge and Radial Organ Complex Regeneration.

Authors:  Chuang Mu; Ruijia Wang; Tianqi Li; Yuqiang Li; Meilin Tian; Wenqian Jiao; Xiaoting Huang; Lingling Zhang; Xiaoli Hu; Shi Wang; Zhenmin Bao
Journal:  Mar Biotechnol (NY)       Date:  2016-07-09       Impact factor: 3.619

Review 2.  RNA localization in bacteria.

Authors:  Avi-ad Avraam Buskila; Shanmugapriya Kannaiah; Orna Amster-Choder
Journal:  RNA Biol       Date:  2014-10-31       Impact factor: 4.652

3.  Long noncoding RNA MEG3 is downregulated in cervical cancer and affects cell proliferation and apoptosis by regulating miR-21.

Authors:  Jun Zhang; Tingting Yao; Yaxian Wang; Jin Yu; Yunyun Liu; Zhongqiu Lin
Journal:  Cancer Biol Ther       Date:  2016       Impact factor: 4.742

4.  Characterization of RNase MRP RNA and novel snoRNAs from Giardia intestinalis and Trichomonas vaginalis.

Authors:  Xiaowei S Chen; David Penny; Lesley J Collins
Journal:  BMC Genomics       Date:  2011-11-06       Impact factor: 3.969

5.  Systematic transcriptome wide analysis of lncRNA-miRNA interactions.

Authors:  Saakshi Jalali; Deeksha Bhartiya; Mukesh Kumar Lalwani; Sridhar Sivasubbu; Vinod Scaria
Journal:  PLoS One       Date:  2013-02-06       Impact factor: 3.240

6.  Analysis of the miRNA-mRNA-lncRNA networks in ER+ and ER- breast cancer cell lines.

Authors:  Qian Wu; Li Guo; Fei Jiang; Lei Li; Zhong Li; Feng Chen
Journal:  J Cell Mol Med       Date:  2015-09-28       Impact factor: 5.310

7.  Genomewide comparison and novel ncRNAs of Aquificales.

Authors:  Marcus Lechner; Astrid I Nickel; Stefanie Wehner; Konstantin Riege; Nicolas Wieseke; Benedikt M Beckmann; Roland K Hartmann; Manja Marz
Journal:  BMC Genomics       Date:  2014-06-25       Impact factor: 3.969

8.  Spatial Partitioning of miRNAs Is Related to Sequence Similarity in Overall Transcriptome.

Authors:  William Seffens; Fisseha Abebe; Chad Evans; Xiao-Qian Wang
Journal:  Int J Mol Sci       Date:  2016-06-08       Impact factor: 5.923

9.  A Novel LncRNA, MuLnc1, Associated With Environmental Stress in Mulberry (Morus multicaulis).

Authors:  Ying-Ping Gai; Shuo-Shuo Yuan; Ya-Nan Zhao; Huai-Ning Zhao; Hua-Liang Zhang; Xian-Ling Ji
Journal:  Front Plant Sci       Date:  2018-05-29       Impact factor: 5.753

Review 10.  Small RNAs, Big Diseases.

Authors:  Iwona Rzeszutek; Aditi Singh
Journal:  Int J Mol Sci       Date:  2020-08-09       Impact factor: 5.923

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