| Literature DB >> 21915736 |
Zi-Cheng Li1, Li-Hui An, Qing Fu, Ying Liu, Lei Zhang, Hao Chen, Xing-Ru Zhao, Li-Jing Wang, Bing-Hui Zheng, Lin-Bo Zhang.
Abstract
The construction of a normalized cDNA library is a popular tool for identifying novel biomarkers for monitoring environmental pollution. In the present study, a normalized cDNA library was constructed from the river snail Bellamya aeruginosa after exposure to Cu(2+) by using the SMART technique. The titer of the cDNA library was 1.78 × 10(6) pfu/ml, with a recombinant efficiency of 95.8%. In addition, from 6,000 randomly selected and sequenced clones, 5,473 high-quality ESTs were identified. After processing the sequences, 3,961 unigenes representing 897 contigs and 3,064 singlets were obtained with 27.6% redundancy. Analysis of expressed sequenced tags using COG and GO annotation and KEGG pathway data showed that a large group of genes related to growth and development, signal transduction, and defense mechanisms were present in the cDNA library. Based on our findings, this normalized cDNA library will provide a valuable resource for further research on functional genes and ecotoxicology in B. aeruginosa.Entities:
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Year: 2011 PMID: 21915736 DOI: 10.1007/s10646-011-0786-y
Source DB: PubMed Journal: Ecotoxicology ISSN: 0963-9292 Impact factor: 2.823