Literature DB >> 21915736

Construction and characterization of a normalized cDNA library from the river snail Bellamya aeruginosa after exposure to copper.

Zi-Cheng Li1, Li-Hui An, Qing Fu, Ying Liu, Lei Zhang, Hao Chen, Xing-Ru Zhao, Li-Jing Wang, Bing-Hui Zheng, Lin-Bo Zhang.   

Abstract

The construction of a normalized cDNA library is a popular tool for identifying novel biomarkers for monitoring environmental pollution. In the present study, a normalized cDNA library was constructed from the river snail Bellamya aeruginosa after exposure to Cu(2+) by using the SMART technique. The titer of the cDNA library was 1.78 × 10(6) pfu/ml, with a recombinant efficiency of 95.8%. In addition, from 6,000 randomly selected and sequenced clones, 5,473 high-quality ESTs were identified. After processing the sequences, 3,961 unigenes representing 897 contigs and 3,064 singlets were obtained with 27.6% redundancy. Analysis of expressed sequenced tags using COG and GO annotation and KEGG pathway data showed that a large group of genes related to growth and development, signal transduction, and defense mechanisms were present in the cDNA library. Based on our findings, this normalized cDNA library will provide a valuable resource for further research on functional genes and ecotoxicology in B. aeruginosa.

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Year:  2011        PMID: 21915736     DOI: 10.1007/s10646-011-0786-y

Source DB:  PubMed          Journal:  Ecotoxicology        ISSN: 0963-9292            Impact factor:   2.823


  34 in total

1.  Effects of heavy metals on antioxidants and stress-responsive gene expression in Javanese medaka (Oryzias javanicus).

Authors:  Seonock Woo; Seungshic Yum; Hong-Seog Park; Taek-Kyun Lee; Jae-Chun Ryu
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2008-08-08       Impact factor: 3.228

2.  Sequencing of cDNA clones that encode bovine ferritin H and L chains.

Authors:  K Orino; K Eguchi; T Nakayama; S Yamamoto; K Watanabe
Journal:  Comp Biochem Physiol B Biochem Mol Biol       Date:  1997-11       Impact factor: 2.231

3.  Oxidative stress, liver biotransformation and genotoxic effects induced by copper in Anguilla anguilla L.--the influence of pre-exposure to beta-naphthoflavone.

Authors:  C Gravato; M Teles; M Oliveira; M A Santos
Journal:  Chemosphere       Date:  2006-06-02       Impact factor: 7.086

4.  Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction.

Authors:  Y Y Zhu; E M Machleder; A Chenchik; R Li; P D Siebert
Journal:  Biotechniques       Date:  2001-04       Impact factor: 1.993

5.  Construction and characterization of EST libraries from the porcelain crab, Petrolisthes cinctipes.

Authors:  Jonathon H Stillman; Kristen S Teranishi; Abderrhamane Tagmount; Erika A Lindquist; Peter B Brokstein
Journal:  Integr Comp Biol       Date:  2006-06-03       Impact factor: 3.326

6.  Potentiation of arsenic-induced cytotoxicity by sulfur amino acid deprivation (SAAD) through activation of ERK1/2, p38 kinase and JNK1: the distinct role of JNK1 in SAAD-potentiated mercury toxicity.

Authors:  M H Son; K W Kang; C H Lee; S G Kim
Journal:  Toxicol Lett       Date:  2001-04-08       Impact factor: 4.372

7.  [Bioaccumulation of sediment heavy metals in Bellamya aeruginosa and its relations with the metals geochemical fractions].

Authors:  Tao-Wu Ma; Cheng Zhu; Gui-Yan Wang; Ke Zhou; Jin-Ying Peng; Jia Liu
Journal:  Ying Yong Sheng Tai Xue Bao       Date:  2010-03

Review 8.  Marine invertebrate cytochrome P450: emerging insights from vertebrate and insects analogies.

Authors:  Kim F Rewitz; Bjarne Styrishave; Anders Løbner-Olsen; Ole Andersen
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2006-08       Impact factor: 3.228

9.  Bioaccumulation of the hepatotoxic microcystins in various organs of a freshwater snail from a subtropical Chinese lake, Taihu Lake, with dense toxic Microcystis blooms.

Authors:  Dawen Zhang; Ping Xie; Yaqin Liu; Jun Chen; Gaodao Liang
Journal:  Environ Toxicol Chem       Date:  2007-01       Impact factor: 3.742

10.  Construction of subtracted EST and normalised cDNA libraries from liver of chemical-exposed three-spined stickleback (Gasterosteus aculeatus) containing pollutant-responsive genes as a resource for transcriptome analysis.

Authors:  Margaret M Brown; Timothy D Williams; J Kevin Chipman; Ioanna Katsiadaki; Matthew Sanders; John A Craft
Journal:  Mar Environ Res       Date:  2008-02-26       Impact factor: 3.130

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  2 in total

1.  Estrogen alters the profile of the transcriptome in river snail Bellamya aeruginosa.

Authors:  Kun Lei; Ruizhi Liu; Li-Hui An; Ying-Feng Luo; Gerald A LeBlanc
Journal:  Ecotoxicology       Date:  2014-11-15       Impact factor: 2.823

2.  Large-Scale Investigation of Soybean Gene Functions by Overexpressing a Full-Length Soybean cDNA Library in Arabidopsis.

Authors:  Xiang Li; Lei Huang; Jianhua Lu; Yihui Cheng; Qingbo You; Lijun Wang; Xuejiao Song; Xinan Zhou; Yongqing Jiao
Journal:  Front Plant Sci       Date:  2018-05-09       Impact factor: 5.753

  2 in total

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