Literature DB >> 21914898

Genome of a novel isolate of Paracoccus denitrificans capable of degrading N,N-dimethylformamide.

Dayananda Siddavattam1, Timmanagouda B Karegoudar, Santosh Kumar Mudde, Narender Kumar, Ramani Baddam, Tiruvayipati Suma Avasthi, Niyaz Ahmed.   

Abstract

The bacterial genus Paracoccus is comprised of metabolically versatile organisms having diverse degradative capabilities and potential industrial and environmental applications for bioremediation in particular. We report a de novo-assembled sequence and annotation of the genome of a novel isolate of Paracoccus denitrificans originally sourced from coal mine tailings in India. The isolate was capable of utilizing N,N-dimethylformamide (DMF) as a source of carbon and nitrogen and therefore holds potential for bioremediation and mineralization of industrial pollutants. The genome sequence and biological circuitry revealed thereupon will be invaluable in understanding the metabolic capabilities, functioning, and evolution of this important bacterial organism.

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Year:  2011        PMID： 21914898      PMCID： PMC3187436          DOI： 10.1128/JB.05667-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  16 in total

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Authors:  Aaron C E Darling; Bob Mau; Frederick R Blattner; Nicole T Perna
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3.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
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4.  Paracoccus denitrificans and the evolutionary origin of the mitochondrion.

Authors:  P John; F R Whatley
Journal:  Nature       Date:  1975-04-10       Impact factor: 49.962

5.  Dynamics of denitrification activity of Paracoccus denitrificans in continuous culture during aerobic-anaerobic changes.

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Journal:  J Bacteriol       Date:  1996-08       Impact factor: 3.490

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7.  Evolution of respiratory complex I: "supernumerary" subunits are present in the alpha-proteobacterial enzyme.

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Journal:  J Biol Chem       Date:  2010-11-29       Impact factor: 5.157

8.  GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.

Authors:  John Besemer; Mark Borodovsky
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

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Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

10.  EasyGene--a prokaryotic gene finder that ranks ORFs by statistical significance.

Authors:  Thomas Schou Larsen; Anders Krogh
Journal:  BMC Bioinformatics       Date:  2003-06-03       Impact factor: 3.169
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  10 in total

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2.  Whole-genome sequences and comparative genomics of Salmonella enterica serovar Typhi isolates from patients with fatal and nonfatal typhoid fever in Papua New Guinea.

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3.  Genetic fine structure of a Salmonella enterica serovar Typhi strain associated with the 2005 outbreak of typhoid fever in Kelantan, Malaysia.

Authors:  Ramani Baddam; Narender Kumar; Kwai-Lin Thong; Soo-Tein Ngoi; Cindy Shuan Ju Teh; Kien-Pong Yap; Lay-Ching Chai; Tiruvayipati Suma Avasthi; Niyaz Ahmed
Journal:  J Bacteriol       Date:  2012-07       Impact factor: 3.490

4.  Genome sequencing and analysis of Salmonella enterica serovar Typhi strain CR0063 representing a carrier individual during an outbreak of typhoid fever in Kelantan, Malaysia.

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Journal:  Gut Pathog       Date:  2012-12-13       Impact factor: 4.181

5.  Paracoccus denitrificans possesses two BioR homologs having a role in regulation of biotin metabolism.

Authors:  Youjun Feng; Ritesh Kumar; Dmitry A Ravcheev; Huimin Zhang
Journal:  Microbiologyopen       Date:  2015-06-02       Impact factor: 3.139

6.  Metaproteomics reveals major microbial players and their biodegradation functions in a large-scale aerobic composting plant.

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Journal:  Microb Biotechnol       Date:  2015-05-19       Impact factor: 5.813

7.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Authors:  Donovan H Parks; Michael Imelfort; Connor T Skennerton; Philip Hugenholtz; Gene W Tyson
Journal:  Genome Res       Date:  2015-05-14       Impact factor: 9.043

8.  Characterisation of non-autoinducing tropodithietic Acid (TDA) production from marine sponge Pseudovibrio species.

Authors:  Catriona Harrington; F Jerry Reen; Marlies J Mooij; Fiona A Stewart; Jean-Baptiste Chabot; Antonio F Guerra; Frank O Glöckner; Kristian F Nielsen; Lone Gram; Alan D W Dobson; Claire Adams; Fergal O'Gara
Journal:  Mar Drugs       Date:  2014-12-10       Impact factor: 5.118

9.  Genome Sequence of Paracoccus contaminans LMG 29738T, Isolated from a Water Microcosm.

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Journal:  Genome Announc       Date:  2017-06-08

10.  Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids.

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Journal:  BMC Genomics       Date:  2014-02-12       Impact factor: 3.969
  10 in total

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