Literature DB >> 21914897

Complete genome sequence of the ureolytic Streptococcus salivarius strain 57.I.

Jianing Geng1, Szu-Chuan Huang, Shuangli Li, Songnian Hu, Yi-Ywan M Chen.   

Abstract

Streptococcus salivarius 57.I is one of the most abundant and highly ureolytic bacteria in the human mouth. It can utilize urea as the sole nitrogen source via the activity of urease. Complete genome sequencing of S. salivarius 57.I revealed a chromosome and a phage which are absent in strain SK126.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21914897      PMCID: PMC3187406          DOI: 10.1128/JB.05670-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  18 in total

1.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  cadDX operon of Streptococcus salivarius 57.I.

Authors:  Yi-Ywan M Chen; C W Feng; C F Chiu; Robert A Burne
Journal:  Appl Environ Microbiol       Date:  2007-12-28       Impact factor: 4.792

4.  Viewing and editing assembled sequences using Consed.

Authors:  David Gordon
Journal:  Curr Protoc Bioinformatics       Date:  2003-08

5.  Transcriptional regulation of the Streptococcus salivarius 57.I urease operon.

Authors:  Y Y Chen; C A Weaver; D R Mendelsohn; R A Burne
Journal:  J Bacteriol       Date:  1998-11       Impact factor: 3.490

6.  KEGG: Kyoto Encyclopedia of Genes and Genomes.

Authors:  H Ogata; S Goto; K Sato; W Fujibuchi; H Bono; M Kanehisa
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

7.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

8.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

9.  Dual functions of Streptococcus salivarius urease.

Authors:  Y Y Chen; C A Weaver; R A Burne
Journal:  J Bacteriol       Date:  2000-08       Impact factor: 3.490

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

View more
  9 in total

1.  YMC-2011, a Temperate Phage of Streptococcus salivarius 57.I.

Authors:  Wen-Chun Chou; Szu-Chuan Huang; Cheng-Hsun Chiu; Yi-Ywan M Chen
Journal:  Appl Environ Microbiol       Date:  2017-03-02       Impact factor: 4.792

2.  The pH-dependent expression of the urease operon in Streptococcus salivarius is mediated by CodY.

Authors:  Szu-Chuan Huang; Robert A Burne; Yi-Ywan M Chen
Journal:  Appl Environ Microbiol       Date:  2014-06-20       Impact factor: 4.792

3.  Complete genome sequence of Streptococcus salivarius PS4, a strain isolated from human milk.

Authors:  Virginia Martín; Antonio Maldonado-Barragán; Esther Jiménez; Patricia Ruas-Madiedo; Leónides Fernández; Juan M Rodríguez
Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

4.  Complete genome and transcriptomes of Streptococcus parasanguinis FW213: phylogenic relations and potential virulence mechanisms.

Authors:  Jianing Geng; Cheng-Hsun Chiu; Petrus Tang; Yaping Chen; Hui-Ru Shieh; Songnian Hu; Yi-Ywan M Chen
Journal:  PLoS One       Date:  2012-04-18       Impact factor: 3.240

5.  Temperate Streptococcus thermophilus phages expressing superinfection exclusion proteins of the Ltp type.

Authors:  Yahya Ali; Sabrina Koberg; Stefanie Heßner; Xingmin Sun; Björn Rabe; Angela Back; Horst Neve; Knut J Heller
Journal:  Front Microbiol       Date:  2014-03-13       Impact factor: 5.640

6.  Role of VicRKX and GlnR in pH-Dependent Regulation of the Streptococcus salivarius 57.I Urease Operon.

Authors:  Szu-Chuan Huang; Yi-Ywan M Chen
Journal:  mSphere       Date:  2016-05-18       Impact factor: 4.389

Review 7.  Serine-rich repeat proteins from gut microbes.

Authors:  Dimitrios Latousakis; Donald A MacKenzie; Andrea Telatin; Nathalie Juge
Journal:  Gut Microbes       Date:  2019-04-29

8.  Pediatric fecal microbiota harbor diverse and novel antibiotic resistance genes.

Authors:  Aimée M Moore; Sanket Patel; Kevin J Forsberg; Bin Wang; Gayle Bentley; Yasmin Razia; Xuan Qin; Phillip I Tarr; Gautam Dantas
Journal:  PLoS One       Date:  2013-11-13       Impact factor: 3.240

9.  Phylogenomics and the dynamic genome evolution of the genus Streptococcus.

Authors:  Vincent P Richards; Sara R Palmer; Paulina D Pavinski Bitar; Xiang Qin; George M Weinstock; Sarah K Highlander; Christopher D Town; Robert A Burne; Michael J Stanhope
Journal:  Genome Biol Evol       Date:  2014-04       Impact factor: 3.416

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.