Literature DB >> 21914896

Complete genome sequence of a nonculturable Methanococcus maripaludis strain extracted in a metagenomic survey of petroleum reservoir fluids.

Xiaoyi Wang1, Paul Greenfield, Dongmei Li, Philip Hendry, Herbert Volk, Tara D Sutherland.   

Abstract

Extraction of genome sequences from metagenomic data is crucial for reconstructing the metabolism of microbial communities that cannot be mimicked in the laboratory. A complete Methanococcus maripaludis genome was generated from metagenomic data derived from a thermophilic subsurface oil reservoir. M. maripaludis is a hydrogenotrophic methanogenic species that is common in mesophilic saline environments. Comparison of the genome from the thermophilic, subsurface environment with the genome of the type species will provide insight into the adaptation of a methanogenic genome to an oil reservoir environment.

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Year:  2011        PMID: 21914896      PMCID: PMC3187424          DOI: 10.1128/JB.05835-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  5 in total

1.  Genomic and functional adaptation in surface ocean planktonic prokaryotes.

Authors:  Shibu Yooseph; Kenneth H Nealson; Douglas B Rusch; John P McCrow; Christopher L Dupont; Maria Kim; Justin Johnson; Robert Montgomery; Steve Ferriera; Karen Beeson; Shannon J Williamson; Andrey Tovchigrechko; Andrew E Allen; Lisa A Zeigler; Granger Sutton; Eric Eisenstadt; Yu-Hui Rogers; Robert Friedman; Marvin Frazier; J Craig Venter
Journal:  Nature       Date:  2010-11-04       Impact factor: 49.962

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

3.  Iron corrosion activity of anaerobic hydrogen-consuming microorganisms isolated from oil facilities.

Authors:  Koji Mori; Hirohito Tsurumaru; Shigeaki Harayama
Journal:  J Biosci Bioeng       Date:  2010-05-26       Impact factor: 2.894

4.  Iron-corroding methanogen isolated from a crude-oil storage tank.

Authors:  Taku Uchiyama; Kimio Ito; Koji Mori; Hirohito Tsurumaru; Shigeaki Harayama
Journal:  Appl Environ Microbiol       Date:  2010-01-29       Impact factor: 4.792

5.  Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis.

Authors:  E L Hendrickson; R Kaul; Y Zhou; D Bovee; P Chapman; J Chung; E Conway de Macario; J A Dodsworth; W Gillett; D E Graham; M Hackett; A K Haydock; A Kang; M L Land; R Levy; T J Lie; T A Major; B C Moore; I Porat; A Palmeiri; G Rouse; C Saenphimmachak; D Söll; S Van Dien; T Wang; W B Whitman; Q Xia; Y Zhang; F W Larimer; M V Olson; J A Leigh
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

  5 in total
  2 in total

1.  Complete Genome Sequence of the Methanococcus maripaludis Type Strain JJ (DSM 2067), a Model for Selenoprotein Synthesis in Archaea.

Authors:  Anja Poehlein; Daniel Heym; Vivien Quitzke; Julia Fersch; Rolf Daniel; Michael Rother
Journal:  Genome Announc       Date:  2018-04-05

Review 2.  Metabolic processes of Methanococcus maripaludis and potential applications.

Authors:  Nishu Goyal; Zhi Zhou; Iftekhar A Karimi
Journal:  Microb Cell Fact       Date:  2016-06-10       Impact factor: 5.328

  2 in total

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