Literature DB >> 21914894

Complete genome sequences of Mycobacterium tuberculosis strains CCDC5079 and CCDC5080, which belong to the Beijing family.

Yuanyuan Zhang1, Chen Chen, Jie Liu, Haijun Deng, Aizhen Pan, Lishui Zhang, Xiuqin Zhao, Mingxiang Huang, Bing Lu, Haiyan Dong, Pengcheng Du, Weijun Chen, KangLin Wan.   

Abstract

Mycobacterium tuberculosis is one of most prevalent pathogens in the world. Drug-resistant strains of this pathogen caused by the excessive use of antibiotics have long posed serious threats to public health worldwide. A broader picture of drug resistance mechanisms at the genomic level can be obtained only with large-scale comparative genomic methodology. Two closely related Beijing family isolates, one resistant to four first-line drugs (CCDC5180) and one sensitive to them (CCDC5079), were completely sequenced. These sequences will serve as valuable references for further drug resistance site identification studies and could be of great importance for developing drugs targeting these sites.

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Year:  2011        PMID: 21914894      PMCID: PMC3187387          DOI: 10.1128/JB.05452-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  7 in total

1.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

3.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  Consensus statement. Global burden of tuberculosis: estimated incidence, prevalence, and mortality by country. WHO Global Surveillance and Monitoring Project.

Authors:  C Dye; S Scheele; P Dolin; V Pathania; M C Raviglione
Journal:  JAMA       Date:  1999-08-18       Impact factor: 56.272

7.  Tuberculosis drug resistance mutation database.

Authors:  Andreas Sandgren; Michael Strong; Preetika Muthukrishnan; Brian K Weiner; George M Church; Megan B Murray
Journal:  PLoS Med       Date:  2009-02-10       Impact factor: 11.069

  7 in total
  21 in total

1.  A genome-wide analysis of multidrug-resistant and extensively drug-resistant strains of Mycobacterium tuberculosis Beijing genotype.

Authors:  Wei Wu; Huajun Zheng; Lu Zhang; Zilu Wen; Shulin Zhang; Hao Pei; Guohua Yu; Yongqiang Zhu; Zhenling Cui; Zhongyi Hu; Honghai Wang; Yao Li
Journal:  Mol Genet Genomics       Date:  2013-06-26       Impact factor: 3.291

2.  Analysis of mutations in streptomycin-resistant strains reveals a simple and reliable genetic marker for identification of the Mycobacterium tuberculosis Beijing genotype.

Authors:  Cristina Villellas; Liselotte Aristimuño; María-Asunción Vitoria; Cristina Prat; Silvia Blanco; Darío García de Viedma; José Domínguez; Sofía Samper; José A Aínsa
Journal:  J Clin Microbiol       Date:  2013-04-24       Impact factor: 5.948

3.  Dynamic population changes in Mycobacterium tuberculosis during acquisition and fixation of drug resistance in patients.

Authors:  Gang Sun; Tao Luo; Chongguang Yang; Xinran Dong; Jing Li; Yongqiang Zhu; Huajun Zheng; Weidong Tian; Shengyue Wang; Clifton E Barry; Jian Mei; Qian Gao
Journal:  J Infect Dis       Date:  2012-09-14       Impact factor: 5.226

4.  Does Choice Matter? Reference-Based Alignment for Molecular Epidemiology of Tuberculosis.

Authors:  Robyn S Lee; Marcel A Behr
Journal:  J Clin Microbiol       Date:  2016-04-13       Impact factor: 5.948

5.  Rapidly Correcting Frameshift Mutations in the Mycobacterium tuberculosis orn Gene Produce Reversible Ethambutol Resistance and Small-Colony-Variant Morphology.

Authors:  Hassan Safi; Subramanya Lingaraju; Shuyi Ma; Seema Husain; Mainul Hoque; Patricia Soteropoulos; Tige Rustad; David R Sherman; David Alland
Journal:  Antimicrob Agents Chemother       Date:  2020-08-20       Impact factor: 5.191

6.  Comparative genomic analysis of Mycobacterium tuberculosis drug resistant strains from Russia.

Authors:  Elena N Ilina; Egor A Shitikov; Larisa N Ikryannikova; Dmitry G Alekseev; Dmitri E Kamashev; Maja V Malakhova; Tatjana V Parfenova; Maxim V Afanas'ev; Dmitry S Ischenko; Nikolai A Bazaleev; Tatjana G Smirnova; Elena E Larionova; Larisa N Chernousova; Alexey V Beletsky; Andrei V Mardanov; Nikolai V Ravin; Konstantin G Skryabin; Vadim M Govorun
Journal:  PLoS One       Date:  2013-02-20       Impact factor: 3.240

7.  Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer.

Authors:  Kayo Okumura; Masako Kato; Teruo Kirikae; Mitsunori Kayano; Tohru Miyoshi-Akiyama
Journal:  BMC Genomics       Date:  2015-03-20       Impact factor: 3.969

8.  Whole-Genome Sequence of the Potentially Hypertransmissible Multidrug-Resistant Mycobacterium tuberculosis Beijing Strain OM-V02_005.

Authors:  Yoshitaka Tateishi; Aki Tamaru; Yoshitoshi Ogura; Mamiko Niki; Takayuki Wada; Taro Yamamoto; Kazuto Hirata; Tetsuya Hayashi; Sohkichi Matsumoto
Journal:  Genome Announc       Date:  2013-08-08

9.  Draft Genome Sequence of a Clinical Isolate of Mycobacterium tuberculosis Strain PR05.

Authors:  Azwin Ismail; L K Teh; Y F Ngeow; M N Norazmi; Zainuddin F Zainul; T H Tang; N Najimudin; M Z Salleh
Journal:  Genome Announc       Date:  2013-06-20

10.  A novel molecular typing method of Mycobacteria based on DNA barcoding visualization.

Authors:  Bin Liu; Xiaotian Zhang; Honglan Huang; Ying Zhang; Fengfeng Zhou; Guoqing Wang
Journal:  J Clin Bioinforma       Date:  2014-02-20
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