Literature DB >> 21914884

Genome sequence of Anaerophaga sp. strain HS1, a novel, moderately thermophilic, strictly anaerobic bacterium isolated from hot spring sediment.

Zhaoming Gao1, Xin Liu, Lingwei Ruan.   

Abstract

Anaerophaga sp. strain HS1 was isolated from offshore hot spring sediment in Xiamen, China. It was identified as a novel, moderately thermophilic, strictly anaerobic bacterium affiliated with the family Marinilabiaceae and showed xylanase activity. Here, we describe the 3.88-Mb draft genome sequence of Anaerophaga sp. strain HS1 and the annotation analysis of related xylanase genes.

Entities:  

Mesh：

Year:  2011        PMID： 21914884      PMCID： PMC3187444          DOI： 10.1128/JB.05719-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  The KEGG resource for deciphering the genome.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Yasushi Okuno; Masahiro Hattori
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.

Authors:  Margarete Bauer; Michael Kube; Hanno Teeling; Michael Richter; Thierry Lombardot; Elke Allers; Chris A Würdemann; Christian Quast; Heiner Kuhl; Florian Knaust; Dagmar Woebken; Kerstin Bischof; Marc Mussmann; Jomuna V Choudhuri; Folker Meyer; Richard Reinhardt; Rudolf I Amann; Frank Oliver Glöckner
Journal:  Environ Microbiol       Date:  2006-12       Impact factor: 5.491

4.  De novo assembly of human genomes with massively parallel short read sequencing.

Authors:  Ruiqiang Li; Hongmei Zhu; Jue Ruan; Wubin Qian; Xiaodong Fang; Zhongbin Shi; Yingrui Li; Shengting Li; Gao Shan; Karsten Kristiansen; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal:  Genome Res       Date:  2009-12-17       Impact factor: 9.043

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Authors:  R L Tatusov; D A Natale; I V Garkavtsev; T A Tatusova; U T Shankavaram; B S Rao; B Kiryutin; M Y Galperin; N D Fedorova; E V Koonin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

7.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  7 in total
  3 in total

1.  A meta-analysis of the publicly available bacterial and archaeal sequence diversity in saline soils.

Authors:  Bin Ma; Jun Gong
Journal:  World J Microbiol Biotechnol       Date:  2013-06-12       Impact factor: 3.312

2.  Exploration of the relationship between biogas production and microbial community under high salinity conditions.

Authors:  Shaojie Wang; Xiaocong Hou; Haijia Su
Journal:  Sci Rep       Date:  2017-04-25       Impact factor: 4.379

3.  Protective effect of aplysin on liver tissue and the gut microbiota in alcohol-fed rats.

Authors:  Meilan Xue; Ying Liu; Rui Lyu; Na Ge; Man Liu; Yan Ma; Hui Liang
Journal:  PLoS One       Date:  2017-06-16       Impact factor: 3.240
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.