Literature DB >> 21914875

Complete genome analysis of Sulfobacillus acidophilus strain TPY, isolated from a hydrothermal vent in the Pacific Ocean.

Bo Li1, Yaping Chen, Qian Liu, Songnian Hu, Xinhua Chen.   

Abstract

Sulfobacillus acidophilus strain TPY is a moderately thermoacidophilic bacterium originally isolated from a hydrothermal vent in the Pacific Ocean. Ferrous iron and sulfur oxidation in acidic environments in strain TPY have been confirmed. Here we report the genome sequence and annotation of the strain TPY, which is the first complete genome of Sulfobacillus acidophilus.

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Year:  2011        PMID： 21914875      PMCID： PMC3187392          DOI： 10.1128/JB.05684-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

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Authors:  M Kanehisa; S Goto
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2.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
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3.  Identification of differentially expressed genes in Sulfobacillus sp. TPY grown on either elemental sulphur or Fe(2+).

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Journal:  J Gen Appl Microbiol       Date:  2010-10       Impact factor: 1.452

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5.  Apparent redundancy of electron transfer pathways via bc(1) complexes and terminal oxidases in the extremophilic chemolithoautotrophic Acidithiobacillus ferrooxidans.

Authors:  G Brasseur; G Levican; V Bonnefoy; D Holmes; E Jedlicki; D Lemesle-Meunier
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6.  From genomics to chemical genomics: new developments in KEGG.

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Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

7.  The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats.

Authors:  Ibtissem Grissa; Gilles Vergnaud; Christine Pourcel
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8.  CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.

Authors:  Ibtissem Grissa; Gilles Vergnaud; Christine Pourcel
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9.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169

10.  CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats.

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  13 in total

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Journal:  Appl Environ Microbiol       Date:  2017-03-17       Impact factor: 4.792

3.  Quantification of endospore-forming firmicutes by quantitative PCR with the functional gene spo0A.

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4.  Expression, purification and function of cysteine desulfurase from Sulfobacillus acidophilus TPY isolated from deep-sea hydrothermal vent.

Authors:  Yuguang Wang; Qian Liu; Hongbo Zhou; Xinhua Chen
Journal:  3 Biotech       Date:  2017-10-03       Impact factor: 2.406

5.  Comparison of environmental and isolate Sulfobacillus genomes reveals diverse carbon, sulfur, nitrogen, and hydrogen metabolisms.

Authors:  Nicholas B Justice; Anders Norman; Christopher T Brown; Andrea Singh; Brian C Thomas; Jillian F Banfield
Journal:  BMC Genomics       Date:  2014-12-15       Impact factor: 3.969

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Authors:  Celia Méndez-García; Ana I Peláez; Victoria Mesa; Jesús Sánchez; Olga V Golyshina; Manuel Ferrer
Journal:  Front Microbiol       Date:  2015-05-29       Impact factor: 5.640

7.  Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).

Authors:  Iain Anderson; Olga Chertkov; Amy Chen; Elizabeth Saunders; Alla Lapidus; Matt Nolan; Susan Lucas; Nancy Hammon; Shweta Deshpande; Jan-Fang Cheng; Cliff Han; Roxanne Tapia; Lynne A Goodwin; Sam Pitluck; Konstantinos Liolios; Ioanna Pagani; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Krishna Palaniappan; Miriam Land; Chongle Pan; Manfred Rohde; Rüdiger Pukall; Markus Göker; John C Detter; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk; Konstantinos Mavromatis
Journal:  Stand Genomic Sci       Date:  2012-07-20

Review 8.  The globally widespread genus Sulfurimonas: versatile energy metabolisms and adaptations to redox clines.

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9.  Comparative genome analysis reveals metabolic versatility and environmental adaptations of Sulfobacillus thermosulfidooxidans strain ST.

Authors:  Xue Guo; Huaqun Yin; Yili Liang; Qi Hu; Xishu Zhou; Yunhua Xiao; Liyuan Ma; Xian Zhang; Guanzhou Qiu; Xueduan Liu
Journal:  PLoS One       Date:  2014-06-18       Impact factor: 3.240

10.  Sulfur Oxygenase Reductase (Sor) in the Moderately Thermoacidophilic Leaching Bacteria: Studies in Sulfobacillus thermosulfidooxidans and Acidithiobacillus caldus.

Authors:  Claudia Janosch; Francisco Remonsellez; Wolfgang Sand; Mario Vera
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