Literature DB >> 21914874

Whole-genome shotgun sequencing of the sulfur-oxidizing chemoautotroph Tetrathiobacter kashmirensis.

Wriddhiman Ghosh1, Ashish George, Atima Agarwal, Praveen Raj, Masrure Alam, Prosenjit Pyne, Sujoy Kumar Das Gupta.   

Abstract

The chemolithoautotrophic betaproteobacterium Tetrathiobacter kashmirensis belongs to the family Alcaligenaceae and is phylogenetically closely related to pathogens such as Taylorella and Bordetella species. While a complete inorganic sulfur oxidation gene cluster, soxCDYZAXWB, is present in its genome, pathogenicity islands or genes associated with virulence, disease, cellular invasion, and/or intracellular resistance are completely absent.

Entities:  

Mesh：

Substances：

Year:  2011        PMID： 21914874      PMCID： PMC3187427          DOI： 10.1128/JB.05781-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  CAP3: A DNA sequence assembly program.

Authors:  X Huang; A Madan
Journal:  Genome Res       Date:  1999-09       Impact factor: 9.043

2.  The S4-intermediate pathway for the oxidation of thiosulfate by the chemolithoautotroph Tetrathiobacter kashmirensis and inhibition of tetrathionate oxidation by sulfite.

Authors:  Bomba Dam; Sukhendu Mandal; Wriddhiman Ghosh; Sujoy K Das Gupta; Pradosh Roy
Journal:  Res Microbiol       Date:  2007-03-12       Impact factor: 3.992

3.  Reclassification of the members of the genus Tetrathiobacter Ghosh et al. 2005 to the genus Advenella Coenye et al. 2005.

Authors:  A Gibello; A I Vela; M Martín; A Barra-Caracciolo; P Grenni; J F Fernández-Garayzábal
Journal:  Int J Syst Evol Microbiol       Date:  2009-06-30       Impact factor: 2.747

4.  Tetrathiobacter kashmirensis gen. nov., sp. nov., a novel mesophilic, neutrophilic, tetrathionate-oxidizing, facultatively chemolithotrophic betaproteobacterium isolated from soil from a temperate orchard in Jammu and Kashmir, India.

Authors:  Wriddhiman Ghosh; Angshuman Bagchi; Sukhendu Mandal; Bomba Dam; Pradosh Roy
Journal:  Int J Syst Evol Microbiol       Date:  2005-09       Impact factor: 2.747

5.  Evolution of the first metabolic cycles.

Authors:  G Wächtershäuser
Journal:  Proc Natl Acad Sci U S A       Date:  1990-01       Impact factor: 11.205

Review 6.  Biochemistry and molecular biology of lithotrophic sulfur oxidation by taxonomically and ecologically diverse bacteria and archaea.

Authors:  Wriddhiman Ghosh; Bomba Dam
Journal:  FEMS Microbiol Rev       Date:  2009-06-10       Impact factor: 16.408

7.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  7 in total
  8 in total

1.  Employing a recombinant strain of Advenella mimigardefordensis for biotechnical production of Homopolythioesters from 3,3'-dithiodipropionic acid.

Authors:  Yongzhen Xia; Jan Hendrik Wübbeler; Qingsheng Qi; Alexander Steinbüchel
Journal:  Appl Environ Microbiol       Date:  2012-02-17       Impact factor: 4.792

2.  Identification of 3-sulfinopropionyl coenzyme A (CoA) desulfinases within the Acyl-CoA dehydrogenase superfamily.

Authors:  Marc Schürmann; Rebecca Michaela Demming; Marco Krewing; Judith Rose; Jan Hendrik Wübbeler; Alexander Steinbüchel
Journal:  J Bacteriol       Date:  2013-12-06       Impact factor: 3.490

3.  Kinetic enrichment of 34S during proteobacterial thiosulfate oxidation and the conserved role of SoxB in S-S bond breaking.

Authors:  Masrure Alam; Prosenjit Pyne; Aninda Mazumdar; Aditya Peketi; Wriddhiman Ghosh
Journal:  Appl Environ Microbiol       Date:  2013-05-17       Impact factor: 4.792

4.  Genome implosion elicits host-confinement in Alcaligenaceae: evidence from the comparative genomics of Tetrathiobacter kashmirensis, a pathogen in the making.

Authors:  Wriddhiman Ghosh; Masrure Alam; Chayan Roy; Prosenjit Pyne; Ashish George; Ranadhir Chakraborty; Saikat Majumder; Atima Agarwal; Sheolee Chakraborty; Subrata Majumdar; Sujoy Kumar Das Gupta
Journal:  PLoS One       Date:  2013-05-31       Impact factor: 3.240

5.  Draft Genome Sequence of Advenella kashmirensis Strain W13003, a Polycyclic Aromatic Hydrocarbon-Degrading Bacterium.

Authors:  Xinxin Wang; Decai Jin; Lisha Zhou; Liang Wu; Wei An; Lin Zhao
Journal:  Genome Announc       Date:  2014-01-30

6.  Proteomic analysis of organic sulfur compound utilisation in Advenella mimigardefordensis strain DPN7T.

Authors:  Christina Meinert; Ulrike Brandt; Viktoria Heine; Jessica Beyert; Sina Schmidl; Jan Hendrik Wübbeler; Birgit Voigt; Katharina Riedel; Alexander Steinbüchel
Journal:  PLoS One       Date:  2017-03-30       Impact factor: 3.240

7.  Fine de novo sequencing of a fungal genome using only SOLiD short read data: verification on Aspergillus oryzae RIB40.

Authors:  Myco Umemura; Yoshinori Koyama; Itaru Takeda; Hiroko Hagiwara; Tsutomu Ikegami; Hideaki Koike; Masayuki Machida
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

8.  A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis.

Authors:  Katrine L Whiteson; David Hernandez; Vladimir Lazarevic; Nadia Gaia; Laurent Farinelli; Patrice François; Paola Pilo; Joachim Frey; Jacques Schrenzel
Journal:  BMC Genomics       Date:  2014-03-01       Impact factor: 3.969
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.