Literature DB >> 21913077

Global DNA methylation analysis using the Luminometric Methylation Assay.

Mohsen Karimi1, Karin Luttropp, Tomas J Ekström.   

Abstract

Epigenetic alterations regulate the utilization of the genome by permitting or inhibiting access of transcription factors and associated complexes. Although there are several different types of epigenetic alterations, such as acetylation and methylation of histone tails, the one which has been the most extensively studied is DNA-methylation, wherein the cytosine residue in a CpG dinucleotide is methylated. Luminometric Methylation Assay (LUMA) enables researchers to study global methylation by using methylation-sensitive restriction enzymes followed by Pyrosequencing(®) which quantitates the number of cuts in the genome relative to an internal standard. The relative measurement of global methylation levels is simple and enables up to 96 samples to be analyzed at the same time.

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Year:  2011        PMID: 21913077     DOI: 10.1007/978-1-61779-316-5_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  9 in total

1.  Two-step epigenetic Mendelian randomization: a strategy for establishing the causal role of epigenetic processes in pathways to disease.

Authors:  Caroline L Relton; George Davey Smith
Journal:  Int J Epidemiol       Date:  2012-02       Impact factor: 7.196

2.  Global DNA methylation levels in human adipose tissue are related to fat distribution and glucose homeostasis.

Authors:  Maria Keller; Susan Kralisch; Kerstin Rohde; Dorit Schleinitz; Arne Dietrich; Michael R Schön; Daniel Gärtner; Tobias Lohmann; Miriam Dreßler; Anke Tönjes; Michael Stumvoll; Peter Kovacs; Mathias Fasshauer; Matthias Blüher; Yvonne Böttcher
Journal:  Diabetologia       Date:  2014-08-22       Impact factor: 10.122

3.  Epigenetic regulation of COL15A1 in smooth muscle cell replicative aging and atherosclerosis.

Authors:  Jessica J Connelly; Olga A Cherepanova; Jennifer F Doss; Themistoclis Karaoli; Travis S Lillard; Christina A Markunas; Sarah Nelson; Tianyuan Wang; Peter D Ellis; Cordelia F Langford; Carol Haynes; David M Seo; Pascal J Goldschmidt-Clermont; Svati H Shah; William E Kraus; Elizabeth R Hauser; Simon G Gregory
Journal:  Hum Mol Genet       Date:  2013-08-02       Impact factor: 6.150

4.  H1 linker histone promotes epigenetic silencing by regulating both DNA methylation and histone H3 methylation.

Authors:  Seung-Min Yang; Byung Ju Kim; Laura Norwood Toro; Arthur I Skoultchi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-09       Impact factor: 11.205

5.  Widespread recovery of methylation at gametic imprints in hypomethylated mouse stem cells following rescue with DNMT3A2.

Authors:  Avinash Thakur; Sarah-Jayne Mackin; Rachelle E Irwin; Karla M O'Neill; Gareth Pollin; Colum Walsh
Journal:  Epigenetics Chromatin       Date:  2016-11-22       Impact factor: 4.954

6.  Tracing the transitions from pluripotency to germ cell fate with CRISPR screening.

Authors:  Jamie A Hackett; Yun Huang; Ufuk Günesdogan; Kristjan A Gretarsson; Toshihiro Kobayashi; M Azim Surani
Journal:  Nat Commun       Date:  2018-10-16       Impact factor: 14.919

7.  Bisphenol a exposure disrupts genomic imprinting in the mouse.

Authors:  Martha Susiarjo; Isaac Sasson; Clementina Mesaros; Marisa S Bartolomei
Journal:  PLoS Genet       Date:  2013-04-04       Impact factor: 5.917

8.  Ontogeny, conservation and functional significance of maternally inherited DNA methylation at two classes of non-imprinted genes.

Authors:  Charlotte E Rutledge; Avinash Thakur; Karla M O'Neill; Rachelle E Irwin; Shun Sato; Ken Hata; Colum P Walsh
Journal:  Development       Date:  2014-02-12       Impact factor: 6.868

9.  Independent functions of DNMT1 and USP7 at replication foci.

Authors:  Olya Yarychkivska; Omid Tavana; Wei Gu; Timothy H Bestor
Journal:  Epigenetics Chromatin       Date:  2018-02-27       Impact factor: 4.954

  9 in total

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