Literature DB >> 21912952

Functional curation of the Sulfolobus solfataricus P2 and S. acidocaldarius 98-3 complete genome sequences.

Domink Esser1, Theresa Kouril, Melanie Zaparty, Pawel Sierocinski, Patricia P Chan, Todd Lowe, John Van der Oost, Sonja-Verena Albers, Dietmar Schomburg, Kira S Makarova, Bettina Siebers.   

Abstract

The thermoacidophiles Sulfolobus solfataricus P2 and S. acidocaldarius 98-3 are considered key model organisms representing a major phylum of the Crenarchaeota. Because maintaining current, accurate genome information is indispensable for modern biology, we have updated gene function annotation using the arCOGs database, plus other available functional, structural and phylogenetic information. The goal of this initiative is continuous improvement of genome annotation with the support of the Sulfolobus research community.

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Year:  2011        PMID： 21912952     DOI： 10.1007/s00792-011-0392-1

Source DB:  PubMed          Journal:  Extremophiles        ISSN： 1431-0651            Impact factor:   2.395


  18 in total

1.  Gene capture in archaeal chromosomes.

Authors:  Q She; X Peng; W Zillig; R A Garrett
Journal:  Nature       Date:  2001-01-25       Impact factor: 49.962

2.  The complete genome of the crenarchaeon Sulfolobus solfataricus P2.

Authors:  Q She; R K Singh; F Confalonieri; Y Zivanovic; G Allard; M J Awayez; C C Chan-Weiher; I G Clausen; B A Curtis; A De Moors; G Erauso; C Fletcher; P M Gordon; I Heikamp-de Jong; A C Jeffries; C J Kozera; N Medina; X Peng; H P Thi-Ngoc; P Redder; M E Schenk; C Theriault; N Tolstrup; R L Charlebois; W F Doolittle; M Duguet; T Gaasterland; R A Garrett; M A Ragan; C W Sensen; J Van der Oost
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-26       Impact factor: 11.205

3.  Production of recombinant and tagged proteins in the hyperthermophilic archaeon Sulfolobus solfataricus.

Authors:  S-V Albers; M Jonuscheit; S Dinkelaker; T Urich; A Kletzin; R Tampé; A J M Driessen; C Schleper
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

4.  Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature.

Authors:  T D Brock; K M Brock; R T Belly; R L Weiss
Journal:  Arch Mikrobiol       Date:  1972

5.  Phenotypic characterization of the archaebacterial genus Sulfolobus: comparison of five wild-type strains.

Authors:  D W Grogan
Journal:  J Bacteriol       Date:  1989-12       Impact factor: 3.490

6.  Expanding and understanding the genetic toolbox of the hyperthermophilic genus Sulfolobus.

Authors:  Michaela Wagner; Silvia Berkner; Malgorzata Ajon; Arnold J M Driessen; Georg Lipps; Sonja-Verena Albers
Journal:  Biochem Soc Trans       Date:  2009-02       Impact factor: 5.407

7.  Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus.

Authors:  Ling Deng; Haojun Zhu; Zhengjun Chen; Yun Xiang Liang; Qunxin She
Journal:  Extremophiles       Date:  2009-06-10       Impact factor: 2.395

8.  Targeted disruption of the alpha-amylase gene in the hyperthermophilic archaeon Sulfolobus solfataricus.

Authors:  Penny Worthington; Viet Hoang; Francisco Perez-Pomares; Paul Blum
Journal:  J Bacteriol       Date:  2003-01       Impact factor: 3.490

Review 9.  Shuffling of Sulfolobus genomes by autonomous and non-autonomous mobile elements.

Authors:  K Brügger; E Torarinsson; P Redder; L Chen; R A Garrett
Journal:  Biochem Soc Trans       Date:  2004-04       Impact factor: 5.407

10.  Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.

Authors:  Kira S Makarova; Alexander V Sorokin; Pavel S Novichkov; Yuri I Wolf; Eugene V Koonin
Journal:  Biol Direct       Date:  2007-11-27       Impact factor: 4.540
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  11 in total

1.  Functional Insights Into Protein Acetylation in the Hyperthermophilic Archaeon Sulfolobus islandicus.

Authors:  Jingjing Cao; Tongkun Wang; Qian Wang; Xiaowei Zheng; Li Huang
Journal:  Mol Cell Proteomics       Date:  2019-06-09       Impact factor: 5.911

2.  Archaeal signal transduction: impact of protein phosphatase deletions on cell size, motility, and energy metabolism in Sulfolobus acidocaldarius.

Authors:  Julia Reimann; Dominik Esser; Alvaro Orell; Fabian Amman; Trong Khoa Pham; Josselin Noirel; Ann-Christin Lindås; Rolf Bernander; Phillip C Wright; Bettina Siebers; Sonja-Verena Albers
Journal:  Mol Cell Proteomics       Date:  2013-09-27       Impact factor: 5.911

Review 3.  Protein phosphorylation and its role in archaeal signal transduction.

Authors:  Dominik Esser; Lena Hoffmann; Trong Khoa Pham; Christopher Bräsen; Wen Qiu; Phillip C Wright; Sonja-Verena Albers; Bettina Siebers
Journal:  FEMS Microbiol Rev       Date:  2016-07-29       Impact factor: 16.408

4.  The SmAP1/2 proteins of the crenarchaeon Sulfolobus solfataricus interact with the exosome and stimulate A-rich tailing of transcripts.

Authors:  Birgit Märtens; Linlin Hou; Fabian Amman; Michael T Wolfinger; Elena Evguenieva-Hackenberg; Udo Bläsi
Journal:  Nucleic Acids Res       Date:  2017-07-27       Impact factor: 16.971

5.  Activity-based protein profiling as a robust method for enzyme identification and screening in extremophilic Archaea.

Authors:  Susanne Zweerink; Verena Kallnik; Sabrina Ninck; Sabrina Nickel; Julia Verheyen; Marcel Blum; Alexander Wagner; Ingo Feldmann; Albert Sickmann; Sonja-Verena Albers; Christopher Bräsen; Farnusch Kaschani; Bettina Siebers; Markus Kaiser
Journal:  Nat Commun       Date:  2017-05-08       Impact factor: 14.919

6.  Expanding the archaellum regulatory network - the eukaryotic protein kinases ArnC and ArnD influence motility of Sulfolobus acidocaldarius.

Authors:  Lena Hoffmann; Andreas Schummer; Julia Reimann; Maria F Haurat; Amanda J Wilson; Morgan Beeby; Bettina Warscheid; Sonja-V Albers
Journal:  Microbiologyopen       Date:  2016-10-22       Impact factor: 3.139

7.  Genome-scale reconstruction and analysis of the metabolic network in the hyperthermophilic archaeon Sulfolobus solfataricus.

Authors:  Thomas Ulas; S Alexander Riemer; Melanie Zaparty; Bettina Siebers; Dietmar Schomburg
Journal:  PLoS One       Date:  2012-08-31       Impact factor: 3.240

8.  Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park.

Authors:  Mircea Podar; Kira S Makarova; David E Graham; Yuri I Wolf; Eugene V Koonin; Anna-Louise Reysenbach
Journal:  Biol Direct       Date:  2013-04-22       Impact factor: 4.540

9.  Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer.

Authors:  Yuri I Wolf; Kira S Makarova; Natalya Yutin; Eugene V Koonin
Journal:  Biol Direct       Date:  2012-12-14       Impact factor: 4.540

10.  Isolation of Extracellular Polymeric Substances from Biofilms of the Thermoacidophilic Archaeon Sulfolobus acidocaldarius.

Authors:  Silke Jachlewski; Witold D Jachlewski; Uwe Linne; Christopher Bräsen; Jost Wingender; Bettina Siebers
Journal:  Front Bioeng Biotechnol       Date:  2015-08-27
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